Variant report

Variant	rs9929959
Chromosome Location	chr16:72910030-72910031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:72882688..72884307-chr16:72909000..72911546,2	MCF-7	breast:
2	chr16:72897681..72899604-chr16:72909159..72912052,2	MCF-7	breast:
3	chr16:72908996..72912815-chr16:73090105..73094174,3	MCF-7	breast:
4	chr16:72909808..72911772-chr16:73103855..73105830,2	MCF-7	breast:
5	chr16:72907986..72911750-chr16:73080381..73083029,3	MCF-7	breast:
6	chr16:72869681..72872432-chr16:72909425..72912073,2	MCF-7	breast:
7	chr16:72900009..72904474-chr16:72907917..72911518,7	MCF-7	breast:
8	chr16:72909950..72913062-chr16:72961183..72965659,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction
ENSG00000272250	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12102708	1.00[AMR][1000 genomes]
rs13330786	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13330847	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13331811	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13332605	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13334344	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336635	1.00[AMR][1000 genomes]
rs13336787	1.00[AMR][1000 genomes]
rs13337721	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13337986	1.00[AMR][1000 genomes]
rs13338961	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13339024	1.00[AMR][1000 genomes]
rs28405979	1.00[AMR][1000 genomes]
rs28495101	1.00[AMR][1000 genomes]
rs28571692	1.00[AMR][1000 genomes]
rs28635002	1.00[AMR][1000 genomes]
rs28734843	1.00[AFR][1000 genomes]
rs28739563	1.00[AMR][1000 genomes]
rs61737017	1.00[AMR][1000 genomes]
rs9925803	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9927597	1.00[AMR][1000 genomes]
rs9930264	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9930403	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9932992	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9933480	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9940385	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv572959	chr16:72890216-72923327	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72883400-72918800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr16:72883600-72912200	Weak transcription	Ovary	ovary
3	chr16:72884200-72911600	Weak transcription	Gastric	stomach
4	chr16:72893200-72911400	Weak transcription	Stomach Mucosa	stomach
5	chr16:72895200-72918000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr16:72900000-72910600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr16:72900400-72912000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr16:72902800-72911000	Weak transcription	Fetal Stomach	stomach
9	chr16:72902800-72911000	Weak transcription	Right Ventricle	heart
10	chr16:72904200-72910800	Weak transcription	Pancreas	Pancrea
11	chr16:72904600-72911200	Weak transcription	Colonic Mucosa	Colon
12	chr16:72906600-72913000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr16:72907800-72910200	Enhancers	Fetal Intestine Small	intestine
14	chr16:72907800-72912600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr16:72907800-72916400	Weak transcription	Fetal Brain Female	brain
16	chr16:72908400-72910400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr16:72908400-72910800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr16:72908400-72910800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr16:72908400-72910800	Enhancers	HSMMtube	muscle
20	chr16:72908400-72912400	Enhancers	Small Intestine	intestine
21	chr16:72908400-72912600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr16:72908400-72913000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr16:72908400-72913200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr16:72908400-72914400	Enhancers	Fetal Intestine Large	intestine
25	chr16:72908800-72910200	Genic enhancers	HSMM	muscle
26	chr16:72908800-72910600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr16:72908800-72910600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr16:72908800-72911000	Enhancers	HMEC	breast
29	chr16:72908800-72911000	Enhancers	Osteobl	bone
30	chr16:72908800-72911200	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr16:72908800-72911800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr16:72908800-72912800	Enhancers	Primary hematopoietic stem cells	blood
33	chr16:72908800-72912800	Enhancers	Dnd41	blood
34	chr16:72908800-72913000	Enhancers	NHDF-Ad	bronchial
35	chr16:72908800-72913200	Enhancers	Left Ventricle	heart
36	chr16:72908800-72913200	Enhancers	NHLF	lung
37	chr16:72909000-72910400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr16:72909000-72910600	Enhancers	Colon Smooth Muscle	Colon
39	chr16:72909000-72912600	Enhancers	NHEK	skin
40	chr16:72909000-72912800	Enhancers	Adipose Nuclei	Adipose
41	chr16:72909000-72913000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr16:72909000-72913000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr16:72909000-72913000	Enhancers	Fetal Muscle Leg	muscle
44	chr16:72909000-72913000	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr16:72909000-72913400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr16:72909000-72914400	Enhancers	Placenta	Placenta
47	chr16:72909200-72910200	Enhancers	Brain Hippocampus Middle	brain
48	chr16:72909200-72910400	Enhancers	Duodenum Mucosa	Duodenum
49	chr16:72909200-72910400	Enhancers	Psoas Muscle	Psoas
50	chr16:72909200-72910800	Enhancers	Sigmoid Colon	Sigmoid Colon

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