Variant report

Variant	rs9927597
Chromosome Location	chr16:72778617-72778618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12102708	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13330786	1.00[AMR][1000 genomes]
rs13330847	1.00[AMR][1000 genomes]
rs13331811	1.00[AMR][1000 genomes]
rs13332415	0.86[AFR][1000 genomes]
rs13332605	1.00[AMR][1000 genomes]
rs13334344	1.00[AMR][1000 genomes]
rs13336635	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336787	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13337721	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13337986	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13338961	1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs13339024	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28405979	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28495101	1.00[AMR][1000 genomes]
rs28513104	0.90[AFR][1000 genomes]
rs28545320	0.90[AFR][1000 genomes]
rs28571692	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28635002	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28739563	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61737017	1.00[AMR][1000 genomes]
rs8044830	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs9925803	1.00[AMR][1000 genomes]
rs9929959	1.00[AMR][1000 genomes]
rs9930264	1.00[AMR][1000 genomes]
rs9930403	1.00[AMR][1000 genomes]
rs9932383	0.86[AFR][1000 genomes]
rs9932992	1.00[AMR][1000 genomes]
rs9933480	1.00[AMR][1000 genomes]
rs9940385	1.00[AMR][1000 genomes]
rs9940413	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	esv1822094	chr16:72694760-72787961	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv572958	chr16:72696112-72778617	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72773800-72784000	Weak transcription	NH-A	brain
2	chr16:72778000-72778800	Enhancers	Fetal Brain Male	brain
3	chr16:72778200-72784200	Weak transcription	Fetal Lung	lung
4	chr16:72778400-72778800	Flanking Active TSS	GM12878-XiMat	blood
5	chr16:72778600-72784000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr16:72778600-72791400	Weak transcription	Primary B cells from cord blood	blood

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