Variant report

Variant	rs28738871
Chromosome Location	chr6:109669430-109669431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109668456..109674736-chr6:109696300..109702886,9	K562	blood:
2	chr6:109668992..109672376-chr6:109675520..109680148,6	K562	blood:
3	chr6:109629710..109632603-chr6:109666871..109669752,2	K562	blood:
4	chr6:109667528..109670285-chr6:109670801..109673728,2	K562	blood:
5	chr6:109414928..109417329-chr6:109668805..109670563,2	K562	blood:
6	chr6:109665458..109673633-chr6:109699710..109704931,12	MCF-7	breast:
7	chr6:109669396..109675577-chr6:109699158..109705270,9	K562	blood:
8	chr6:109665909..109668467-chr6:109668999..109670640,2	MCF-7	breast:
9	chr6:109667580..109670112-chr6:109691835..109693593,2	MCF-7	breast:
10	chr6:109659815..109666445-chr6:109666719..109672363,9	K562	blood:
11	chr6:109658047..109662027-chr6:109669336..109672001,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000080546	Chromatin interaction
ENSG00000183137	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13362707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480940	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487062	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487065	1.00[AMR][1000 genomes]
rs9487073	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487086	0.81[AFR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:109654200-109671000	Weak transcription	Spleen	Spleen
3	chr6:109654200-109675000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:109657800-109671000	Weak transcription	Lung	lung
6	chr6:109658600-109670600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:109658800-109670600	Weak transcription	Right Atrium	heart
8	chr6:109658800-109677000	Weak transcription	Fetal Stomach	stomach
9	chr6:109660200-109677200	Weak transcription	Thymus	Thymus
10	chr6:109660400-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:109661400-109671400	Weak transcription	Fetal Thymus	thymus
12	chr6:109662600-109682000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:109662800-109669600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:109662800-109670600	Weak transcription	Aorta	Aorta
15	chr6:109662800-109670600	Weak transcription	Right Ventricle	heart
16	chr6:109662800-109671000	Weak transcription	Psoas Muscle	Psoas
17	chr6:109662800-109677000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:109663000-109670600	Weak transcription	Adipose Nuclei	Adipose
19	chr6:109664000-109670800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:109664200-109670800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:109664200-109672800	Weak transcription	HSMM	muscle
22	chr6:109664400-109670400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:109664400-109670600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:109664400-109671000	Weak transcription	Left Ventricle	heart
25	chr6:109665600-109670600	Weak transcription	Pancreas	Pancrea
26	chr6:109665600-109677000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:109665600-109680400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:109665800-109669600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:109665800-109670600	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:109666000-109670800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:109666000-109678000	Weak transcription	Fetal Kidney	kidney
32	chr6:109666400-109675200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:109667000-109669800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:109667800-109671400	Enhancers	Fetal Intestine Small	intestine
35	chr6:109668000-109671200	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr6:109668000-109673800	Enhancers	Stomach Mucosa	stomach
37	chr6:109668000-109674000	Enhancers	Fetal Intestine Large	intestine
38	chr6:109668000-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:109668400-109669800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr6:109668600-109670600	Enhancers	Duodenum Mucosa	Duodenum
41	chr6:109668600-109674800	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr6:109668800-109669600	Enhancers	HepG2	liver
43	chr6:109668800-109670600	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr6:109669000-109669600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr6:109669000-109669800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr6:109669000-109670600	Enhancers	K562	blood
47	chr6:109669000-109674000	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr6:109669000-109683400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr6:109669200-109669600	Weak transcription	Placenta	Placenta
50	chr6:109669200-109669600	Enhancers	NHEK	skin

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