Variant report

Variant	rs9480941
Chromosome Location	chr6:109691639-109691640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109680156..109682689-chr6:109691352..109692864,2	K562	blood:
2	chr6:109654230..109656152-chr6:109690482..109693249,2	MCF-7	breast:
3	chr6:109666475..109669130-chr6:109690489..109693013,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD164-1	chr6:109691614-109694072	NONHSAT114396

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13362707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28738871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480927	0.82[ASW][hapmap];0.85[MKK][hapmap]
rs9480940	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487062	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487063	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487065	1.00[AMR][1000 genomes]
rs9487073	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487086	0.81[AFR][1000 genomes]
rs9487120	0.85[MKK][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9480941	AVPR1B	trans	lymphoblastoid	seeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109675000-109691800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:109675000-109692600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:109675000-109693200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr6:109675000-109694400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr6:109675000-109694600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr6:109675000-109700800	Strong transcription	Placenta	Placenta
7	chr6:109675200-109693200	Strong transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:109676800-109693800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:109677000-109698200	Strong transcription	Fetal Intestine Large	intestine
10	chr6:109677600-109695000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:109677800-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:109678200-109694600	Strong transcription	Fetal Thymus	thymus
13	chr6:109678200-109695200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr6:109678400-109694400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:109678400-109694400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:109678600-109693200	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:109678600-109693400	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:109678800-109695400	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr6:109678800-109699000	Strong transcription	Dnd41	blood
20	chr6:109679000-109693200	Strong transcription	K562	blood
21	chr6:109679200-109700400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:109679400-109700600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:109680400-109697200	Weak transcription	Fetal Brain Male	brain
24	chr6:109680600-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:109680800-109694400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr6:109682400-109692600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:109682600-109700800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:109683200-109699800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:109683600-109692800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr6:109683800-109693400	Strong transcription	Primary B cells from cord blood	blood
31	chr6:109683800-109700600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:109684000-109692000	Weak transcription	Esophagus	oesophagus
33	chr6:109684000-109692800	Weak transcription	NHLF	lung
34	chr6:109684000-109693200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:109684000-109693400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr6:109684000-109693400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:109684000-109693400	Weak transcription	Stomach Mucosa	stomach
38	chr6:109684000-109694600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:109684000-109694600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:109684000-109694600	Weak transcription	Aorta	Aorta
41	chr6:109684000-109694600	Weak transcription	Fetal Heart	heart
42	chr6:109684000-109694600	Weak transcription	Gastric	stomach
43	chr6:109684000-109694600	Weak transcription	Ovary	ovary
44	chr6:109684000-109694600	Weak transcription	Pancreas	Pancrea
45	chr6:109684000-109694800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:109684000-109695400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:109684000-109695800	Weak transcription	Spleen	Spleen
48	chr6:109684000-109702400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:109684200-109693600	Strong transcription	Fetal Muscle Trunk	muscle
50	chr6:109684200-109694600	Weak transcription	Brain Hippocampus Middle	brain

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