Variant report

Variant	rs9487079
Chromosome Location	chr6:109698376-109698377
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:109685661-109704818	K562	blood:	n/a	n/a
2	POLR2A	chr6:109698215-109698400	MCF-7	breast:	n/a	n/a
3	POLR2A	chr6:109698084-109698432	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109696194..109698652-chr6:109768450..109770032,2	K562	blood:

Variant related genes	Relation type
CD164	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13362707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28738871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480940	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487062	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487065	1.00[AMR][1000 genomes]
rs9487073	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487086	0.81[AFR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109675000-109700800	Strong transcription	Placenta	Placenta
2	chr6:109677800-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:109678800-109699000	Strong transcription	Dnd41	blood
4	chr6:109679200-109700400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:109679400-109700600	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:109680600-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:109682600-109700800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:109683200-109699800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:109683800-109700600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:109684000-109702400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:109684400-109702400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:109684600-109700200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:109684600-109700400	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr6:109684800-109700200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:109685800-109700600	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:109686400-109699000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:109686600-109700200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:109686800-109700200	Strong transcription	HSMM	muscle
19	chr6:109687400-109699200	Strong transcription	HMEC	breast
20	chr6:109687400-109700200	Strong transcription	NH-A	brain
21	chr6:109687600-109700200	Strong transcription	NHEK	skin
22	chr6:109688200-109699400	Strong transcription	HepG2	liver
23	chr6:109690600-109701800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr6:109691600-109699600	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:109692000-109700000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:109692800-109700200	Strong transcription	NHLF	lung
27	chr6:109693000-109699200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:109693000-109699600	Strong transcription	Fetal Kidney	kidney
29	chr6:109693200-109699200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr6:109693200-109699200	Strong transcription	Fetal Lung	lung
31	chr6:109693400-109698800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:109693400-109699200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:109693400-109702600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:109693600-109699400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:109693600-109699600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:109693800-109699400	Strong transcription	NHDF-Ad	bronchial
37	chr6:109693800-109700200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:109693800-109700200	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr6:109694000-109699000	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:109694200-109700400	Strong transcription	HUVEC	blood vessel
41	chr6:109694200-109700600	Strong transcription	Osteobl	bone
42	chr6:109694400-109698600	Strong transcription	Liver	Liver
43	chr6:109694400-109699800	Strong transcription	Stomach Smooth Muscle	stomach
44	chr6:109694400-109700200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:109694400-109700400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:109694400-109700400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:109694400-109700400	Strong transcription	Fetal Muscle Leg	muscle
48	chr6:109694400-109700800	Strong transcription	Fetal Muscle Trunk	muscle
49	chr6:109694400-109701800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:109694600-109698400	Strong transcription	Lung	lung

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