Variant report

Variant	rs9487080
Chromosome Location	chr6:109699919-109699920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:109685661-109704818	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109414759..109417179-chr6:109698567..109701300,2	MCF-7	breast:
2	chr6:109699708..109703613-chr6:109762807..109765058,4	K562	blood:
3	chr6:109561446..109564141-chr6:109698737..109700867,2	K562	blood:
4	chr6:109556321..109558385-chr6:109699289..109701143,2	K562	blood:
5	chr6:109330539..109333281-chr6:109699482..109701455,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260273	TF binding region
ENSG00000080546	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000243587	Chromatin interaction
ENSG00000183137	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13362707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28738871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480940	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487062	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487065	1.00[AMR][1000 genomes]
rs9487073	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487086	0.81[AFR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109675000-109700800	Strong transcription	Placenta	Placenta
2	chr6:109677800-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:109679200-109700400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:109679400-109700600	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109680600-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:109682600-109700800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:109683800-109700600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:109684000-109702400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:109684400-109702400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:109684600-109700200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:109684600-109700400	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr6:109684800-109700200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:109685800-109700600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:109686600-109700200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:109686800-109700200	Strong transcription	HSMM	muscle
16	chr6:109687400-109700200	Strong transcription	NH-A	brain
17	chr6:109687600-109700200	Strong transcription	NHEK	skin
18	chr6:109690600-109701800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:109692000-109700000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:109692800-109700200	Strong transcription	NHLF	lung
21	chr6:109693400-109702600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:109693800-109700200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:109693800-109700200	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr6:109694200-109700400	Strong transcription	HUVEC	blood vessel
25	chr6:109694200-109700600	Strong transcription	Osteobl	bone
26	chr6:109694400-109700200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:109694400-109700400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:109694400-109700400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:109694400-109700400	Strong transcription	Fetal Muscle Leg	muscle
30	chr6:109694400-109700800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr6:109694400-109701800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:109695200-109700200	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr6:109695600-109700200	Strong transcription	Colonic Mucosa	Colon
34	chr6:109696000-109700000	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr6:109696000-109700200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:109696000-109700200	Weak transcription	Right Atrium	heart
37	chr6:109696200-109700400	Weak transcription	Fetal Heart	heart
38	chr6:109696600-109700400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:109696600-109700600	Weak transcription	A549	lung
40	chr6:109696600-109701400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:109696800-109700200	Weak transcription	Small Intestine	intestine
42	chr6:109696800-109702400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:109697000-109700400	Weak transcription	Aorta	Aorta
44	chr6:109697200-109700600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
45	chr6:109697400-109700000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:109697400-109700200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
47	chr6:109697600-109700200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
48	chr6:109697600-109700200	Genic enhancers	Adipose Nuclei	Adipose
49	chr6:109697600-109700800	Genic enhancers	Brain Hippocampus Middle	brain
50	chr6:109697800-109701200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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