Variant report

Variant	rs2876540
Chromosome Location	chr6:143355133-143355134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11155277	0.96[EUR][1000 genomes]
rs12662675	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12662882	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12663937	0.96[EUR][1000 genomes]
rs12664681	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1334477	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17590726	0.80[EUR][1000 genomes]
rs1889462	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2876541	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35073854	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35569003	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3761996	0.96[EUR][1000 genomes]
rs59463222	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59873234	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7743474	0.96[EUR][1000 genomes]
rs7750571	0.96[EUR][1000 genomes]
rs9321887	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143338800-143356400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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