Variant report

Variant	rs1889462
Chromosome Location	chr6:143375642-143375643
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143372247..143374306-chr6:143375405..143377390,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11155277	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12662675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12662882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12663937	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12664681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12664685	0.82[EUR][1000 genomes]
rs12665439	0.81[ASN][1000 genomes]
rs1334477	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1334478	0.82[EUR][1000 genomes]
rs17590726	0.83[EUR][1000 genomes]
rs1855559	0.86[ASN][1000 genomes]
rs1855560	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2142936	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2876540	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2876541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35073854	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35569003	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3761996	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789782	0.89[ASN][1000 genomes]
rs3804526	0.89[ASN][1000 genomes]
rs3804527	0.89[ASN][1000 genomes]
rs3811093	0.87[ASN][1000 genomes]
rs3827797	0.89[ASN][1000 genomes]
rs4896614	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4896615	0.82[EUR][1000 genomes]
rs4896617	0.89[ASN][1000 genomes]
rs59463222	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59873234	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59974378	0.82[EUR][1000 genomes]
rs6570545	0.89[ASN][1000 genomes]
rs6902732	0.89[ASN][1000 genomes]
rs6906195	0.82[ASN][1000 genomes]
rs6906414	0.89[ASN][1000 genomes]
rs6938207	0.87[ASN][1000 genomes]
rs73777857	0.82[EUR][1000 genomes]
rs7743474	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7750571	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7774011	0.89[ASN][1000 genomes]
rs7775419	0.82[EUR][1000 genomes]
rs9321887	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9321888	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321889	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386021	0.81[ASN][1000 genomes]
rs9390046	0.87[ASN][1000 genomes]
rs9399416	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399419	0.82[ASN][1000 genomes]
rs9403430	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403432	0.86[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143356800-143377000	Weak transcription	HepG2	liver
2	chr6:143372000-143380400	Weak transcription	K562	blood
3	chr6:143373600-143380800	Weak transcription	GM12878-XiMat	blood
4	chr6:143374800-143380800	Weak transcription	Primary T cells from cord blood	blood
5	chr6:143375200-143380000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:143375200-143381200	Weak transcription	Aorta	Aorta
7	chr6:143375600-143379600	Weak transcription	Fetal Intestine Small	intestine

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