Variant report

Variant	rs3804527
Chromosome Location	chr6:143384258-143384259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143382100..143384981-chr6:143387320..143388828,2	K562	blood:
2	chr6:143384099..143386737-chr6:143410836..143413520,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11155277	0.87[ASN][1000 genomes]
rs12664685	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1334478	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17590726	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.83[ASN][1000 genomes]
rs1855559	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1855560	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1889462	0.89[ASN][1000 genomes]
rs2142936	0.94[ASN][1000 genomes]
rs3761996	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs3789782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789783	0.82[CHD][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap]
rs3804526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811093	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3827797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4489173	0.89[JPT][hapmap]
rs4896614	0.97[ASN][1000 genomes]
rs4896615	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4896617	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896618	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59974378	0.81[ASN][1000 genomes]
rs6570545	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902732	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906414	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73777857	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7750571	0.86[CHB][hapmap]
rs7771808	0.85[JPT][hapmap]
rs7774011	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775419	0.83[ASN][1000 genomes]
rs7775912	0.85[CHB][hapmap]
rs9321887	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.94[ASN][1000 genomes]
rs9321888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9321889	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9390046	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399416	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403430	0.96[ASN][1000 genomes]
rs9403432	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496511	0.85[JPT][hapmap]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143385400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143382600-143386200	Weak transcription	Pancreas	Pancrea
3	chr6:143382600-143389200	Weak transcription	Aorta	Aorta
4	chr6:143382600-143426800	Weak transcription	Ovary	ovary
5	chr6:143382800-143384400	Flanking Active TSS	K562	blood
6	chr6:143382800-143384600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:143382800-143384800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr6:143382800-143385400	Weak transcription	Left Ventricle	heart
9	chr6:143382800-143386000	Enhancers	HSMM	muscle
10	chr6:143382800-143389000	Weak transcription	NH-A	brain
11	chr6:143382800-143394800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:143383000-143384400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:143383000-143384400	Enhancers	HSMMtube	muscle
14	chr6:143383000-143384800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:143383000-143385400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:143383000-143385400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:143383000-143385800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:143383000-143386000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:143383000-143386000	Weak transcription	Osteobl	bone
20	chr6:143383200-143385000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:143383200-143385400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr6:143383200-143385600	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr6:143383200-143386000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:143383200-143386600	Enhancers	Fetal Intestine Large	intestine
25	chr6:143383200-143386800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:143383400-143385000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr6:143383400-143386000	Enhancers	Duodenum Mucosa	Duodenum
28	chr6:143383400-143386400	Enhancers	Fetal Intestine Small	intestine
29	chr6:143383400-143389000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:143383600-143385600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr6:143383600-143386800	Enhancers	HMEC	breast
32	chr6:143383800-143385000	Weak transcription	Fetal Kidney	kidney
33	chr6:143383800-143385800	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:143383800-143386000	Weak transcription	Small Intestine	intestine
35	chr6:143383800-143386400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr6:143383800-143387200	Enhancers	HepG2	liver
37	chr6:143383800-143389000	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:143384000-143384400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr6:143384000-143384600	Enhancers	Fetal Brain Male	brain
40	chr6:143384000-143385400	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr6:143384000-143385400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:143384000-143385800	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr6:143384000-143386400	Enhancers	Dnd41	blood
44	chr6:143384200-143384400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr6:143384200-143384800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:143384200-143385400	Enhancers	Liver	Liver
47	chr6:143384200-143385400	Weak transcription	NHEK	skin
48	chr6:143384200-143385600	Enhancers	H1 Cell Line	embryonic stem cell
49	chr6:143384200-143386600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr6:143384200-143394600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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