Variant report

Variant	rs3789783
Chromosome Location	chr6:143429476-143429477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143416987..143419497-chr6:143429093..143431319,2	K562	blood:
2	chr6:143421246..143425129-chr6:143429361..143431906,3	K562	blood:
3	chr6:143427658..143429205-chr6:143429349..143432332,2	MCF-7	breast:
4	chr6:143427899..143429487-chr6:143435629..143437861,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12660943	0.82[CHB][hapmap]
rs12663085	0.82[CHB][hapmap]
rs12665439	0.84[CHB][hapmap]
rs1334478	0.81[JPT][hapmap]
rs1334480	0.85[CHB][hapmap];0.82[EUR][1000 genomes]
rs1334481	0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs1334482	0.82[TSI][hapmap]
rs17072160	1.00[CEU][hapmap]
rs17590726	0.81[JPT][hapmap]
rs3789782	0.85[JPT][hapmap]
rs3804526	0.85[JPT][hapmap]
rs3804527	0.82[CHD][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap]
rs3804528	0.82[CHB][hapmap]
rs3804530	0.82[CHB][hapmap]
rs3804531	0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3804535	0.90[GIH][hapmap];0.88[TSI][hapmap]
rs3827797	0.85[JPT][hapmap]
rs4489173	0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58851256	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6900049	0.86[CHB][hapmap];0.97[GIH][hapmap];0.88[TSI][hapmap]
rs6905621	0.86[CHB][hapmap]
rs6910423	0.83[ASW][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs6910964	0.85[CHB][hapmap]
rs6914857	0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6923010	0.82[TSI][hapmap]
rs6936192	0.82[CHB][hapmap];0.82[TSI][hapmap]
rs6938207	0.85[JPT][hapmap]
rs7738387	0.86[CHB][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs7741073	0.82[CHB][hapmap]
rs7754388	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7771808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7774011	0.82[CHD][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap]
rs7775912	0.95[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9321887	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs9321888	0.85[JPT][hapmap]
rs9386021	0.86[CHB][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap]
rs9399416	0.85[JPT][hapmap]
rs9399418	1.00[CEU][hapmap]
rs9403434	0.90[ASN][1000 genomes]
rs9403435	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9496511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9496521	0.86[CHB][hapmap];0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3789783	AIG1	cis	lymphoblastoid	seeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143386400-143431800	Weak transcription	NHEK	skin
2	chr6:143389600-143437000	Weak transcription	HSMM	muscle
3	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143397400-143431600	Weak transcription	HMEC	breast
5	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
6	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
7	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:143419800-143431600	Weak transcription	Primary T cells from cord blood	blood
9	chr6:143419800-143432000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:143425000-143432600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:143425800-143429600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:143426400-143431800	Weak transcription	NH-A	brain
15	chr6:143427200-143431600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:143427400-143430200	Enhancers	Adipose Nuclei	Adipose
17	chr6:143427400-143431200	Enhancers	Liver	Liver
18	chr6:143427600-143429600	Enhancers	Fetal Intestine Large	intestine
19	chr6:143427600-143429800	Enhancers	HepG2	liver
20	chr6:143427600-143431200	Weak transcription	Ovary	ovary
21	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
22	chr6:143428000-143437800	Weak transcription	K562	blood
23	chr6:143428200-143430000	Enhancers	Fetal Lung	lung
24	chr6:143428200-143430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:143428600-143429800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:143428600-143429800	Enhancers	Fetal Stomach	stomach
28	chr6:143428600-143430000	Enhancers	Osteobl	bone
29	chr6:143428600-143430200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:143429000-143430000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:143429200-143430200	Enhancers	HSMMtube	muscle
32	chr6:143429200-143431600	Weak transcription	Fetal Brain Male	brain
33	chr6:143429200-143433400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:143429400-143430400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:143429400-143430400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:143429400-143435600	Weak transcription	Fetal Intestine Small	intestine

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