Variant report

Variant	rs7754388
Chromosome Location	chr6:143401067-143401068
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12665439	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3789783	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3804531	0.83[AFR][1000 genomes]
rs4489173	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58851256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6906195	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6914857	0.83[AFR][1000 genomes]
rs6938207	0.82[AMR][1000 genomes]
rs7771808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775912	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386021	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9399419	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9403434	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496511	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496521	0.82[AFR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143384200-143407400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:143384200-143407600	Weak transcription	Psoas Muscle	Psoas
4	chr6:143386000-143403800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:143386400-143431800	Weak transcription	NHEK	skin
6	chr6:143389600-143437000	Weak transcription	HSMM	muscle
7	chr6:143389800-143418800	Weak transcription	Osteobl	bone
8	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:143396600-143402200	Enhancers	Liver	Liver
10	chr6:143397400-143431600	Weak transcription	HMEC	breast
11	chr6:143398000-143408000	Weak transcription	Left Ventricle	heart
12	chr6:143398800-143404000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:143399800-143401200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:143400000-143401200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:143400000-143401200	Enhancers	Fetal Intestine Small	intestine
16	chr6:143400400-143401400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:143400600-143403800	Weak transcription	Small Intestine	intestine
18	chr6:143400800-143408400	Weak transcription	Fetal Intestine Large	intestine
19	chr6:143400800-143409400	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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