Variant report

Variant	rs6938207
Chromosome Location	chr6:143387339-143387340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143386661..143389188-chr6:143391760..143395170,3	K562	blood:
2	chr6:143380960..143386461-chr6:143387320..143395252,12	K562	blood:
3	chr6:143382100..143384981-chr6:143387320..143388828,2	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11155277	0.85[ASN][1000 genomes]
rs12664685	0.82[ASN][1000 genomes]
rs1334478	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs17590726	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1855559	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1855560	0.98[ASN][1000 genomes]
rs1889462	0.87[ASN][1000 genomes]
rs2142936	0.92[ASN][1000 genomes]
rs3761996	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs3789782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3789783	0.85[JPT][hapmap]
rs3804526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3804527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3811093	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3827797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4489173	0.89[JPT][hapmap]
rs4896614	0.95[ASN][1000 genomes]
rs4896615	0.82[ASN][1000 genomes]
rs4896617	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896618	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58851256	0.82[AMR][1000 genomes]
rs6570545	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6902732	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906414	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73777857	0.82[ASN][1000 genomes]
rs7750571	0.86[CHB][hapmap]
rs7754388	0.82[AMR][1000 genomes]
rs7771808	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs7774011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7775419	0.81[ASN][1000 genomes]
rs7775912	0.81[CHB][hapmap]
rs9321887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9321888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9321889	0.98[ASN][1000 genomes]
rs9390046	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399416	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9403430	0.94[ASN][1000 genomes]
rs9403432	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403435	0.82[AMR][1000 genomes]
rs9496511	0.86[JPT][hapmap]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143389200	Weak transcription	Aorta	Aorta
2	chr6:143382600-143426800	Weak transcription	Ovary	ovary
3	chr6:143382800-143389000	Weak transcription	NH-A	brain
4	chr6:143382800-143394800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:143383400-143389000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:143383800-143389000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:143384200-143394600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:143384200-143407400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:143384200-143407600	Weak transcription	Psoas Muscle	Psoas
10	chr6:143384800-143388600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:143384800-143389000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:143385600-143389000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:143385600-143392000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:143385600-143394600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:143385800-143388800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:143385800-143389200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:143386000-143389000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:143386000-143389000	Weak transcription	HSMM	muscle
19	chr6:143386000-143403800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:143386200-143388600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:143386200-143396400	Weak transcription	Left Ventricle	heart
22	chr6:143386400-143387400	ZNF genes & repeats	K562	blood
23	chr6:143386400-143389200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:143386400-143389200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:143386400-143390800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:143386400-143391000	Weak transcription	Small Intestine	intestine
27	chr6:143386400-143431800	Weak transcription	NHEK	skin
28	chr6:143386800-143388200	Weak transcription	Liver	Liver
29	chr6:143386800-143391800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:143386800-143395200	Weak transcription	HMEC	breast
31	chr6:143387000-143388200	ZNF genes & repeats	Fetal Intestine Small	intestine
32	chr6:143387000-143388800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:143387200-143388200	Weak transcription	Osteobl	bone
34	chr6:143387200-143389200	Weak transcription	HepG2	liver

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