Variant report

Variant	rs1855559
Chromosome Location	chr6:143356781-143356782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143356042..143358155-chr6:143519699..143521453,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11155277	0.85[ASN][1000 genomes]
rs12664685	0.87[ASN][1000 genomes]
rs1334478	0.95[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs17590726	0.95[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1855560	0.97[ASN][1000 genomes]
rs1889462	0.86[ASN][1000 genomes]
rs2142936	0.97[ASN][1000 genomes]
rs3761996	0.91[CHB][hapmap];0.80[CHD][hapmap];0.86[ASN][1000 genomes]
rs3789782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789783	0.84[ASW][hapmap];0.84[JPT][hapmap]
rs3804526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3804527	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3811093	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3827797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4489173	0.94[JPT][hapmap]
rs4896614	1.00[ASN][1000 genomes]
rs4896615	0.87[ASN][1000 genomes]
rs4896617	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896618	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59974378	0.84[ASN][1000 genomes]
rs6570545	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6902732	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6906414	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6938207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73777857	0.87[ASN][1000 genomes]
rs7750571	0.86[CHB][hapmap]
rs7771808	0.84[JPT][hapmap]
rs7774011	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7775419	0.85[ASN][1000 genomes]
rs7775912	0.85[CHB][hapmap]
rs9321887	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9321888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9321889	0.97[ASN][1000 genomes]
rs9390046	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399416	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9403430	0.99[ASN][1000 genomes]
rs9403432	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496511	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143356000-143356800	Enhancers	GM12878-XiMat	blood
2	chr6:143356000-143356800	ZNF genes & repeats	HepG2	liver
3	chr6:143356000-143356800	Flanking Active TSS	K562	blood
4	chr6:143356400-143356800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:143356400-143356800	Enhancers	Pancreas	Pancrea
6	chr6:143356600-143358000	Weak transcription	Esophagus	oesophagus

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