Variant report

Variant	rs1855560
Chromosome Location	chr6:143380280-143380281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:143380275-143380476	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr6:143380110-143380519	HepG2	liver:	n/a	n/a
3	MAFK	chr6:143380044-143380372	K562	blood:	n/a	chr6:143380172-143380187 chr6:143380196-143380211
4	POLR2A	chr6:143380245-143384281	HepG2	liver:	n/a	n/a
5	CBX3	chr6:143379960-143380474	K562	blood:	n/a	n/a
6	NFYB	chr6:143380075-143380468	K562	blood:	n/a	n/a
7	NFYB	chr6:143380086-143380282	GM12878	blood:	n/a	n/a
8	MAFF	chr6:143380002-143380419	HepG2	liver:	n/a	chr6:143380219-143380237 chr6:143380195-143380213
9	POLR2A	chr6:143380040-143382248	MCF10A-Er-Src	breast:	n/a	n/a
10	MAFK	chr6:143380018-143380405	HepG2	liver:	n/a	chr6:143380172-143380187 chr6:143380196-143380211
11	MAFK	chr6:143380032-143380388	IMR90	lung:	n/a	chr6:143380172-143380187 chr6:143380196-143380211
12	HEY1	chr6:143380210-143380500	HepG2	liver:	n/a	n/a
13	MAFK	chr6:143380013-143380409	HepG2	liver:	n/a	chr6:143380172-143380187 chr6:143380196-143380211
14	MAFF	chr6:143380044-143380324	K562	blood:	n/a	chr6:143380219-143380237 chr6:143380195-143380213
15	MAFK	chr6:143380052-143380305	Hela-S3	cervix:	n/a	chr6:143380172-143380187 chr6:143380196-143380211
16	MAFK	chr6:143380062-143380310	H1-hESC	embryonic stem cell:	n/a	chr6:143380172-143380187 chr6:143380196-143380211
17	NFYA	chr6:143379970-143380488	K562	blood:	n/a	chr6:143380169-143380187 chr6:143380217-143380235 chr6:143380145-143380163
18	RFX5	chr6:143380074-143380374	HepG2	liver:	n/a	n/a
19	JUN	chr6:143380274-143384001	K562	blood:	n/a	chr6:143383060-143383070 chr6:143383060-143383070 chr6:143381799-143381812 chr6:143383060-143383070

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143379898..143383638-chr6:143483833..143489108,8	K562	blood:

Variant related genes	Relation type
AIG1	TF binding region
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11155277	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12662675	0.82[EUR][1000 genomes]
rs12662882	0.82[EUR][1000 genomes]
rs12663937	0.82[EUR][1000 genomes]
rs12664681	0.82[EUR][1000 genomes]
rs12664685	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1334477	0.82[EUR][1000 genomes]
rs1334478	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17590726	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1855559	0.97[ASN][1000 genomes]
rs1889462	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2142936	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2876541	0.82[EUR][1000 genomes]
rs35073854	0.82[EUR][1000 genomes]
rs35569003	0.82[EUR][1000 genomes]
rs3761996	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3789782	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3804526	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3804527	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3811093	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3827797	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896614	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896615	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4896617	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896618	0.85[ASN][1000 genomes]
rs59463222	0.82[EUR][1000 genomes]
rs59873234	0.80[EUR][1000 genomes]
rs59974378	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6570545	1.00[ASN][1000 genomes]
rs6902732	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6906414	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6938207	0.98[ASN][1000 genomes]
rs73777857	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7743474	0.82[EUR][1000 genomes]
rs7750571	0.82[EUR][1000 genomes]
rs7774011	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7775419	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9321887	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9321888	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321889	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390046	0.99[ASN][1000 genomes]
rs9399416	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403430	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403432	0.97[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143372000-143380400	Weak transcription	K562	blood
2	chr6:143373600-143380800	Weak transcription	GM12878-XiMat	blood
3	chr6:143374800-143380800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:143375200-143381200	Weak transcription	Aorta	Aorta
5	chr6:143376000-143380600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:143376200-143380800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:143376800-143380600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:143377200-143380400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:143377200-143380600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:143377200-143380800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:143377200-143380800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:143377200-143380800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:143377600-143380800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:143377800-143380800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:143377800-143380800	Weak transcription	Fetal Lung	lung
16	chr6:143378200-143380800	Weak transcription	Stomach Mucosa	stomach
17	chr6:143378400-143380400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:143378600-143380400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:143378600-143380800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:143379400-143380400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:143379400-143380400	Enhancers	HMEC	breast
22	chr6:143380000-143380400	Enhancers	Liver	Liver
23	chr6:143380000-143380800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:143380000-143380800	Enhancers	Brain Cingulate Gyrus	brain
25	chr6:143380200-143380400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:143380200-143380400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:143380200-143380400	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr6:143380200-143380400	Enhancers	Hela-S3	cervix
29	chr6:143380200-143380600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:143380200-143380600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr6:143380200-143380600	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr6:143380200-143380600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr6:143380200-143380600	Enhancers	Dnd41	blood
34	chr6:143380200-143380800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:143380200-143380800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:143380200-143380800	Active TSS	Brain Anterior Caudate	brain
37	chr6:143380200-143380800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:143380200-143380800	Enhancers	Fetal Brain Male	brain
39	chr6:143380200-143380800	Enhancers	Fetal Intestine Large	intestine
40	chr6:143380200-143380800	Enhancers	Fetal Intestine Small	intestine
41	chr6:143380200-143380800	Enhancers	A549	lung
42	chr6:143380200-143381200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:143380200-143381200	Flanking Active TSS	HepG2	liver
44	chr6:143380200-143381400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:143380200-143381400	Flanking Active TSS	NHEK	skin

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