Variant report

Variant	rs1334477
Chromosome Location	chr6:143380517-143380518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:143380110-143380519	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:143380245-143384281	HepG2	liver:	n/a	n/a
3	POLR2A	chr6:143380412-143383708	HepG2	liver:	n/a	n/a
4	POLR2A	chr6:143380040-143382248	MCF10A-Er-Src	breast:	n/a	n/a
5	JUN	chr6:143380274-143384001	K562	blood:	n/a	chr6:143383060-143383070 chr6:143383060-143383070 chr6:143381799-143381812 chr6:143383060-143383070

No.	Distal block	Cell Line	Cell type
1	chr6:143379898..143383638-chr6:143483833..143489108,8	K562	blood:
2	chr6:143380360..143383135-chr6:143419017..143422482,3	K562	blood:
3	chr6:143265912..143267606-chr6:143380498..143382671,2	MCF-7	breast:

Variant related genes	Relation type
AIG1	TF binding region
ENSG00000225752	Chromatin interaction
ENSG00000010818	Chromatin interaction
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11155277	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12662675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12662882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12663937	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12664262	0.82[ASN][1000 genomes]
rs12664681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12664685	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1334478	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17590726	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1855560	0.82[EUR][1000 genomes]
rs1889462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2142936	0.82[EUR][1000 genomes]
rs2876540	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2876541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35073854	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35569003	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3761996	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3804528	0.82[ASN][1000 genomes]
rs3804529	0.82[ASN][1000 genomes]
rs3804530	0.80[ASN][1000 genomes]
rs4896614	0.82[EUR][1000 genomes]
rs4896615	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58189371	0.82[ASN][1000 genomes]
rs59463222	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59873234	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59974378	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6910964	0.82[ASN][1000 genomes]
rs73777857	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7743474	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7746122	0.81[ASN][1000 genomes]
rs7750571	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764892	0.80[ASN][1000 genomes]
rs7775419	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9321887	0.83[EUR][1000 genomes]
rs9321888	0.82[EUR][1000 genomes]
rs9321889	0.82[EUR][1000 genomes]
rs9399416	0.82[EUR][1000 genomes]
rs9403430	0.82[EUR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143373600-143380800	Weak transcription	GM12878-XiMat	blood
2	chr6:143374800-143380800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:143375200-143381200	Weak transcription	Aorta	Aorta
4	chr6:143376000-143380600	Weak transcription	Adipose Nuclei	Adipose
5	chr6:143376200-143380800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:143376800-143380600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:143377200-143380600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:143377200-143380800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:143377200-143380800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:143377200-143380800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:143377600-143380800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:143377800-143380800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:143377800-143380800	Weak transcription	Fetal Lung	lung
14	chr6:143378200-143380800	Weak transcription	Stomach Mucosa	stomach
15	chr6:143378600-143380800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:143380000-143380800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:143380000-143380800	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:143380200-143380600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:143380200-143380600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr6:143380200-143380600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr6:143380200-143380600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr6:143380200-143380600	Enhancers	Dnd41	blood
23	chr6:143380200-143380800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:143380200-143380800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:143380200-143380800	Active TSS	Brain Anterior Caudate	brain
26	chr6:143380200-143380800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:143380200-143380800	Enhancers	Fetal Brain Male	brain
28	chr6:143380200-143380800	Enhancers	Fetal Intestine Large	intestine
29	chr6:143380200-143380800	Enhancers	Fetal Intestine Small	intestine
30	chr6:143380200-143380800	Enhancers	A549	lung
31	chr6:143380200-143381200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:143380200-143381200	Flanking Active TSS	HepG2	liver
33	chr6:143380200-143381400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:143380200-143381400	Flanking Active TSS	NHEK	skin
35	chr6:143380400-143380600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:143380400-143380600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:143380400-143380600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:143380400-143380600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:143380400-143380600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:143380400-143380600	Flanking Active TSS	Liver	Liver
41	chr6:143380400-143380600	Enhancers	Brain Hippocampus Middle	brain
42	chr6:143380400-143380600	Flanking Active TSS	HMEC	breast
43	chr6:143380400-143380600	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr6:143380400-143380600	Enhancers	Osteobl	bone
45	chr6:143380400-143380800	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr6:143380400-143380800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:143380400-143380800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:143380400-143380800	Active TSS	Brain Substantia Nigra	brain
49	chr6:143380400-143380800	Active TSS	Fetal Muscle Leg	muscle
50	chr6:143380400-143380800	Active TSS	Skeletal Muscle Male	skeletal muscle

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