Variant report

Variant	rs58189371
Chromosome Location	chr6:143399947-143399948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143395197..143397317-chr6:143399537..143401582,2	K562	blood:
2	chr6:143389762..143391667-chr6:143399155..143401032,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIVEP2-2	chr6:143399819-143400412	NONHSAT115331

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12660943	0.94[ASN][1000 genomes]
rs12663085	0.94[ASN][1000 genomes]
rs12664262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665439	0.86[ASN][1000 genomes]
rs1334477	0.82[ASN][1000 genomes]
rs17590859	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3804528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3804531	0.82[ASN][1000 genomes]
rs59463222	0.82[ASN][1000 genomes]
rs60642579	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61636934	0.89[ASN][1000 genomes]
rs6906195	0.86[ASN][1000 genomes]
rs6910964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914857	0.80[ASN][1000 genomes]
rs6936192	0.89[ASN][1000 genomes]
rs7741073	0.95[ASN][1000 genomes]
rs7746122	0.80[ASN][1000 genomes]
rs7750571	0.82[ASN][1000 genomes]
rs7760119	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7764892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386021	0.84[ASN][1000 genomes]
rs9399419	0.86[ASN][1000 genomes]
rs9496524	0.89[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143384200-143407400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:143384200-143407600	Weak transcription	Psoas Muscle	Psoas
4	chr6:143386000-143403800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:143386400-143431800	Weak transcription	NHEK	skin
6	chr6:143389600-143400000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:143389600-143437000	Weak transcription	HSMM	muscle
8	chr6:143389800-143400000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:143389800-143418800	Weak transcription	Osteobl	bone
10	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:143396600-143402200	Enhancers	Liver	Liver
12	chr6:143396800-143400000	Weak transcription	Fetal Intestine Large	intestine
13	chr6:143397400-143431600	Weak transcription	HMEC	breast
14	chr6:143397600-143400000	Weak transcription	Fetal Intestine Small	intestine
15	chr6:143398000-143408000	Weak transcription	Left Ventricle	heart
16	chr6:143398800-143404000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:143399200-143400200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:143399400-143400600	Enhancers	Small Intestine	intestine
19	chr6:143399400-143400800	Enhancers	HepG2	liver
20	chr6:143399800-143400200	ZNF genes & repeats	Primary T cells from cord blood	blood
21	chr6:143399800-143401200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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