Variant report

Variant	rs12663085
Chromosome Location	chr6:143423579-143423580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143421246..143425129-chr6:143429361..143431906,3	K562	blood:
2	chr6:143419332..143422118-chr6:143422606..143425677,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225752	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12660943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664262	0.94[ASN][1000 genomes]
rs12665439	0.89[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1334480	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs1334481	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs1334482	0.86[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17590859	0.82[CHB][hapmap]
rs2328453	1.00[CEU][hapmap]
rs3789783	0.82[CHB][hapmap]
rs3804528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[ASN][1000 genomes]
rs3804529	0.94[ASN][1000 genomes]
rs3804530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[ASN][1000 genomes]
rs3804531	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3804535	0.82[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes]
rs58189371	0.94[ASN][1000 genomes]
rs61636934	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6900049	0.95[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes]
rs6905621	0.95[CHB][hapmap];0.95[EUR][1000 genomes]
rs6906195	0.82[ASN][1000 genomes]
rs6910423	0.95[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs6910964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.94[ASN][1000 genomes]
rs6914857	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6923010	0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs6936192	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7738387	0.95[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs7741073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7750571	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7760119	0.83[JPT][hapmap];0.87[YRI][hapmap]
rs7764892	0.96[ASN][1000 genomes]
rs7775793	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs7775912	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs9386021	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9399419	0.82[ASN][1000 genomes]
rs9403447	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs9496521	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9496524	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143386400-143431800	Weak transcription	NHEK	skin
3	chr6:143389600-143437000	Weak transcription	HSMM	muscle
4	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:143397400-143431600	Weak transcription	HMEC	breast
6	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
7	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
8	chr6:143417800-143427600	Weak transcription	Fetal Intestine Large	intestine
9	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:143419000-143426000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:143419000-143427000	Weak transcription	Spleen	Spleen
12	chr6:143419200-143425800	Weak transcription	Fetal Intestine Small	intestine
13	chr6:143419200-143427800	Weak transcription	Small Intestine	intestine
14	chr6:143419400-143427400	Weak transcription	K562	blood
15	chr6:143419800-143431600	Weak transcription	Primary T cells from cord blood	blood
16	chr6:143419800-143432000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:143421400-143427400	Weak transcription	Liver	Liver
18	chr6:143421400-143428600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:143421800-143424800	Weak transcription	Brain Angular Gyrus	brain
20	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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