Variant report

Variant	rs1334481
Chromosome Location	chr6:143443544-143443545
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143437209..143439672-chr6:143441874..143443715,2	K562	blood:
2	chr6:143441849..143444705-chr6:143484533..143487191,2	K562	blood:
3	chr6:143443205..143445427-chr6:143484533..143486072,2	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12660943	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs12663085	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs12665439	0.83[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1334480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334482	0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs17590859	0.81[JPT][hapmap]
rs2328453	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs3789783	0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs3804528	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs3804530	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap]
rs3804531	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3804535	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60392452	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61636934	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6900049	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6905621	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906195	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6908577	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910423	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910964	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs6914857	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6923010	0.94[JPT][hapmap]
rs6936192	0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7738387	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7741073	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs7775793	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7775912	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs9386021	0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9399419	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9403447	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9496521	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9496524	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
2	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
3	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
6	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:143432000-143452000	Weak transcription	Ovary	ovary
8	chr6:143432800-143444000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:143433000-143445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:143433000-143448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:143433400-143446400	Weak transcription	NH-A	brain
13	chr6:143433400-143447600	Weak transcription	HMEC	breast
14	chr6:143435200-143444000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:143437000-143452000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:143439200-143445400	Weak transcription	K562	blood
17	chr6:143440800-143445400	Weak transcription	Gastric	stomach
18	chr6:143440800-143452800	Weak transcription	Pancreas	Pancrea
19	chr6:143441000-143445400	Weak transcription	Liver	Liver
20	chr6:143441000-143451800	Weak transcription	HepG2	liver
21	chr6:143441200-143479000	Weak transcription	NHLF	lung
22	chr6:143441400-143444000	Weak transcription	Fetal Intestine Large	intestine
23	chr6:143442200-143446600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:143442400-143444200	Weak transcription	Fetal Brain Male	brain
25	chr6:143442600-143450000	Weak transcription	Fetal Intestine Small	intestine
26	chr6:143442600-143450400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:143442600-143451000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:143442600-143451600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:143442800-143450600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:143442800-143450800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:143442800-143452000	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:143442800-143452000	Weak transcription	NHEK	skin
33	chr6:143443000-143443800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:143443000-143451800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:143443200-143452000	Weak transcription	Primary T cells from cord blood	blood

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