Variant report

Variant	rs60392452
Chromosome Location	chr6:143434610-143434611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143424126..143427059-chr6:143431274..143435341,4	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1334480	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1334481	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3804531	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3804535	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6900049	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6905621	0.89[ASN][1000 genomes]
rs6908577	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6910423	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6914857	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7738387	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9403447	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9496521	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143389600-143437000	Weak transcription	HSMM	muscle
2	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
3	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
4	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
8	chr6:143428000-143437800	Weak transcription	K562	blood
9	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:143429400-143435600	Weak transcription	Fetal Intestine Small	intestine
11	chr6:143430200-143435600	Weak transcription	Adipose Nuclei	Adipose
12	chr6:143430200-143442200	Weak transcription	HSMMtube	muscle
13	chr6:143432000-143436800	Weak transcription	Fetal Brain Male	brain
14	chr6:143432000-143440600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:143432000-143452000	Weak transcription	Ovary	ovary
16	chr6:143432800-143444000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:143433000-143434800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:143433000-143445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:143433000-143448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:143433200-143434800	Enhancers	Liver	Liver
22	chr6:143433200-143441600	Weak transcription	NHEK	skin
23	chr6:143433400-143435000	Enhancers	HepG2	liver
24	chr6:143433400-143446400	Weak transcription	NH-A	brain
25	chr6:143433400-143447600	Weak transcription	HMEC	breast
26	chr6:143433600-143434800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:143434000-143436600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:143434400-143436800	Weak transcription	Fetal Heart	heart
29	chr6:143434600-143435000	Weak transcription	Fetal Intestine Large	intestine

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