Variant report

Variant	rs7738387
Chromosome Location	chr6:143437284-143437285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143437209..143439672-chr6:143441874..143443715,2	K562	blood:
2	chr6:143427899..143429487-chr6:143435629..143437861,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12660943	0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs12663085	0.95[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs12665439	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1334480	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1334481	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1334482	0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs3761996	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs3789783	0.86[CHB][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs3804528	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs3804530	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs3804531	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3804535	0.86[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60392452	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61636934	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6900049	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6905621	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6906195	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6908577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910423	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910964	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs6914857	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6923010	0.94[JPT][hapmap];0.82[TSI][hapmap]
rs6936192	0.95[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7741073	0.95[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs7771808	0.87[CHB][hapmap];0.92[YRI][hapmap]
rs7775793	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7775912	0.95[CHB][hapmap]
rs9386021	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9399419	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403447	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9496511	0.87[CHB][hapmap];0.92[YRI][hapmap]
rs9496521	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9496524	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7738387	AIG1	cis	lymphoblastoid	seeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
2	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
3	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
7	chr6:143428000-143437800	Weak transcription	K562	blood
8	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:143430200-143442200	Weak transcription	HSMMtube	muscle
10	chr6:143432000-143440600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:143432000-143452000	Weak transcription	Ovary	ovary
12	chr6:143432800-143444000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:143433000-143445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:143433000-143448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:143433200-143441600	Weak transcription	NHEK	skin
17	chr6:143433400-143446400	Weak transcription	NH-A	brain
18	chr6:143433400-143447600	Weak transcription	HMEC	breast
19	chr6:143435000-143437600	Weak transcription	HepG2	liver
20	chr6:143435000-143438400	Enhancers	Fetal Intestine Large	intestine
21	chr6:143435200-143444000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:143435400-143440600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:143435600-143437800	Enhancers	Fetal Intestine Small	intestine
24	chr6:143436000-143440000	Weak transcription	Adipose Nuclei	Adipose
25	chr6:143436200-143438800	Weak transcription	Liver	Liver
26	chr6:143436800-143437400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:143436800-143437400	Enhancers	Fetal Heart	heart
28	chr6:143437000-143440200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:143437000-143440200	Weak transcription	Fetal Brain Male	brain
30	chr6:143437000-143452000	Weak transcription	Stomach Smooth Muscle	stomach

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