Variant report

Variant	rs1334482
Chromosome Location	chr6:143449225-143449226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12660943	0.86[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12663085	0.86[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12665439	0.87[JPT][hapmap]
rs13216732	0.91[AFR][1000 genomes]
rs1334480	0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs1334481	0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs17590859	0.84[JPT][hapmap]
rs2328453	0.84[JPT][hapmap]
rs2876549	0.82[JPT][hapmap]
rs3789783	0.82[TSI][hapmap]
rs3804528	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs3804530	0.86[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs3804531	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs3804535	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61636934	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6900049	0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs6905621	0.81[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes]
rs6910423	0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs6910964	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs6914857	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs6923010	1.00[ASW][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6936192	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7738387	0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs7741073	0.86[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7764892	0.81[ASN][1000 genomes]
rs7775793	0.86[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs9386021	0.81[CHB][hapmap];0.83[JPT][hapmap];0.82[TSI][hapmap]
rs9403447	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9496521	0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs9496524	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
2	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
3	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:143432000-143452000	Weak transcription	Ovary	ovary
5	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:143437000-143452000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:143440800-143452800	Weak transcription	Pancreas	Pancrea
8	chr6:143441000-143451800	Weak transcription	HepG2	liver
9	chr6:143441200-143479000	Weak transcription	NHLF	lung
10	chr6:143442600-143450000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:143442600-143450400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:143442600-143451000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:143442600-143451600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:143442800-143450600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:143442800-143450800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:143442800-143452000	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:143442800-143452000	Weak transcription	NHEK	skin
18	chr6:143443000-143451800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:143443200-143452000	Weak transcription	Primary T cells from cord blood	blood
20	chr6:143443600-143462200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:143443800-143450000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:143443800-143452600	Weak transcription	Brain Angular Gyrus	brain
23	chr6:143443800-143498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:143444000-143449400	Weak transcription	Fetal Stomach	stomach
25	chr6:143444000-143449800	Enhancers	NHDF-Ad	bronchial
26	chr6:143444000-143451800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:143444200-143452000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:143444200-143452000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:143444600-143451000	Weak transcription	Adipose Nuclei	Adipose
30	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:143445400-143451600	Strong transcription	Liver	Liver
32	chr6:143445600-143449400	Weak transcription	Esophagus	oesophagus
33	chr6:143445800-143451800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:143445800-143452000	Weak transcription	Fetal Heart	heart
35	chr6:143445800-143452000	Weak transcription	K562	blood
36	chr6:143445800-143452600	Weak transcription	Aorta	Aorta
37	chr6:143445800-143479200	Weak transcription	Lung	lung
38	chr6:143446000-143450200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:143446000-143451400	Weak transcription	Fetal Brain Male	brain
40	chr6:143446400-143451600	Weak transcription	Fetal Brain Female	brain
41	chr6:143447200-143451600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:143447800-143452000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:143447800-143452000	Weak transcription	HMEC	breast
44	chr6:143447800-143452000	Weak transcription	HSMM	muscle
45	chr6:143448000-143450000	Enhancers	Osteobl	bone
46	chr6:143448000-143450200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:143448000-143451400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr6:143448000-143451800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:143448000-143458600	Weak transcription	NH-A	brain
50	chr6:143448200-143450800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links