Variant report

Variant	rs17590859
Chromosome Location	chr6:143438246-143438247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143437209..143439672-chr6:143441874..143443715,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12660943	0.82[CHB][hapmap]
rs12663085	0.82[CHB][hapmap]
rs12664262	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12665506	1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1334480	0.81[JPT][hapmap]
rs1334481	0.81[JPT][hapmap]
rs1334482	0.84[JPT][hapmap]
rs2328453	0.80[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3761996	0.82[MEX][hapmap]
rs3804528	0.82[CHB][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3804529	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3804530	0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58189371	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60642579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910964	0.84[CHB][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6923010	0.84[JPT][hapmap]
rs6936192	0.82[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap]
rs7741073	0.82[CHB][hapmap]
rs7750571	0.82[MEX][hapmap]
rs7760119	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7764892	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs989325	0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
2	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
3	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
7	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:143430200-143442200	Weak transcription	HSMMtube	muscle
9	chr6:143432000-143440600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:143432000-143452000	Weak transcription	Ovary	ovary
11	chr6:143432800-143444000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:143433000-143445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:143433000-143448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:143433200-143441600	Weak transcription	NHEK	skin
16	chr6:143433400-143446400	Weak transcription	NH-A	brain
17	chr6:143433400-143447600	Weak transcription	HMEC	breast
18	chr6:143435000-143438400	Enhancers	Fetal Intestine Large	intestine
19	chr6:143435200-143444000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:143435400-143440600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:143436000-143440000	Weak transcription	Adipose Nuclei	Adipose
22	chr6:143436200-143438800	Weak transcription	Liver	Liver
23	chr6:143437000-143440200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:143437000-143440200	Weak transcription	Fetal Brain Male	brain
25	chr6:143437000-143452000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:143437800-143438400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr6:143437800-143438400	Genic enhancers	Fetal Intestine Small	intestine
28	chr6:143437800-143439200	Enhancers	K562	blood
29	chr6:143438000-143439000	Weak transcription	HepG2	liver
30	chr6:143438200-143438600	Enhancers	Right Atrium	heart

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