Variant report

Variant	rs7760119
Chromosome Location	chr6:143411259-143411260
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12660943	0.83[JPT][hapmap];0.87[YRI][hapmap]
rs12663085	0.83[JPT][hapmap];0.87[YRI][hapmap]
rs12664262	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12665506	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs17590859	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2328453	0.88[JPT][hapmap];0.82[AMR][1000 genomes]
rs3761996	0.82[MEX][hapmap]
rs3804528	1.00[ASW][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3804529	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3804530	0.83[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58189371	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60642579	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6910964	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6936192	0.82[ASW][hapmap];0.87[YRI][hapmap]
rs7741073	0.83[JPT][hapmap];0.87[YRI][hapmap]
rs7750571	0.82[MEX][hapmap]
rs7764892	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs989325	0.82[MEX][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143386400-143431800	Weak transcription	NHEK	skin
3	chr6:143389600-143437000	Weak transcription	HSMM	muscle
4	chr6:143389800-143418800	Weak transcription	Osteobl	bone
5	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:143397400-143431600	Weak transcription	HMEC	breast
7	chr6:143402000-143412000	Weak transcription	Brain Angular Gyrus	brain
8	chr6:143402200-143418400	Weak transcription	K562	blood
9	chr6:143403200-143417400	Weak transcription	Stomach Mucosa	stomach
10	chr6:143404000-143411600	Weak transcription	Liver	Liver
11	chr6:143404000-143417800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:143404000-143422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:143408200-143418600	Weak transcription	Left Ventricle	heart
14	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
15	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
16	chr6:143408800-143411800	Weak transcription	Psoas Muscle	Psoas
17	chr6:143408800-143417200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:143409800-143413600	Weak transcription	HepG2	liver
19	chr6:143411000-143412400	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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