Variant report

Variant	rs9496511
Chromosome Location	chr6:143394184-143394185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143387478..143390334-chr6:143392291..143394371,2	MCF-7	breast:
2	chr6:143380960..143386461-chr6:143387320..143395252,12	K562	blood:
3	chr6:143392521..143394275-chr6:143483305..143485747,2	K562	blood:
4	chr6:143386661..143389188-chr6:143391760..143395170,3	K562	blood:
5	chr6:143380292..143383947-chr6:143393390..143397104,5	K562	blood:
6	chr6:143387688..143389873-chr6:143393253..143395170,2	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12665439	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1334478	0.81[JPT][hapmap]
rs1334480	0.81[CHB][hapmap]
rs17072160	1.00[CEU][hapmap]
rs17590726	0.81[JPT][hapmap]
rs3789782	0.86[JPT][hapmap]
rs3789783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3804526	0.86[JPT][hapmap]
rs3804527	0.85[JPT][hapmap]
rs3804528	0.83[CHB][hapmap]
rs3804531	0.83[CHB][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs3827797	0.86[JPT][hapmap]
rs4489173	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58851256	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900049	0.87[CHB][hapmap]
rs6905621	0.82[CHB][hapmap]
rs6906195	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6910423	0.87[CHB][hapmap];0.96[YRI][hapmap]
rs6910964	0.81[CHB][hapmap]
rs6914857	0.83[CHB][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs6936192	0.83[CHB][hapmap]
rs6938207	0.86[JPT][hapmap]
rs7738387	0.87[CHB][hapmap];0.92[YRI][hapmap]
rs7754388	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7771808	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774011	0.85[JPT][hapmap]
rs7775912	0.91[CHB][hapmap];0.85[JPT][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321887	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs9321888	0.86[JPT][hapmap]
rs9386021	0.87[CHB][hapmap]
rs9399416	0.86[JPT][hapmap]
rs9399418	1.00[CEU][hapmap]
rs9399419	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9403434	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403435	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496521	0.83[CHB][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143382800-143394800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:143384200-143394600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143384200-143407400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:143384200-143407600	Weak transcription	Psoas Muscle	Psoas
6	chr6:143385600-143394600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:143386000-143403800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:143386200-143396400	Weak transcription	Left Ventricle	heart
9	chr6:143386400-143431800	Weak transcription	NHEK	skin
10	chr6:143386800-143395200	Weak transcription	HMEC	breast
11	chr6:143389600-143400000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:143389600-143437000	Weak transcription	HSMM	muscle
13	chr6:143389800-143400000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:143389800-143418800	Weak transcription	Osteobl	bone
15	chr6:143390200-143394800	Enhancers	Liver	Liver
16	chr6:143390400-143394800	Weak transcription	Fetal Intestine Large	intestine
17	chr6:143391200-143394800	Weak transcription	HepG2	liver
18	chr6:143391800-143396200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:143391800-143396600	Weak transcription	Small Intestine	intestine

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