Variant report

Variant	rs9399419
Chromosome Location	chr6:143407073-143407074
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11155277	0.81[ASN][1000 genomes]
rs12660943	0.82[ASN][1000 genomes]
rs12663085	0.82[ASN][1000 genomes]
rs12664262	0.86[ASN][1000 genomes]
rs12665439	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1334480	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1334481	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1889462	0.82[ASN][1000 genomes]
rs3761996	0.82[ASN][1000 genomes]
rs3804528	0.86[ASN][1000 genomes]
rs3804529	0.86[ASN][1000 genomes]
rs3804530	0.85[ASN][1000 genomes]
rs3804531	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4489173	0.82[EUR][1000 genomes]
rs58189371	0.86[ASN][1000 genomes]
rs58851256	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6900049	0.83[ASN][1000 genomes]
rs6905621	0.84[ASN][1000 genomes]
rs6906195	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908577	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6910423	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6910964	0.86[ASN][1000 genomes]
rs6914857	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7738387	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7741073	0.83[ASN][1000 genomes]
rs7754388	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7764892	0.85[ASN][1000 genomes]
rs7771808	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7775912	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9386021	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403434	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs9403435	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9496511	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9496521	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143384200-143407400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:143384200-143407600	Weak transcription	Psoas Muscle	Psoas
4	chr6:143386400-143431800	Weak transcription	NHEK	skin
5	chr6:143389600-143437000	Weak transcription	HSMM	muscle
6	chr6:143389800-143418800	Weak transcription	Osteobl	bone
7	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:143397400-143431600	Weak transcription	HMEC	breast
9	chr6:143398000-143408000	Weak transcription	Left Ventricle	heart
10	chr6:143400800-143408400	Weak transcription	Fetal Intestine Large	intestine
11	chr6:143400800-143409400	Weak transcription	HepG2	liver
12	chr6:143401200-143408000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:143402000-143412000	Weak transcription	Brain Angular Gyrus	brain
14	chr6:143402200-143407200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:143402200-143418400	Weak transcription	K562	blood
16	chr6:143403200-143409600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:143403200-143417400	Weak transcription	Stomach Mucosa	stomach
18	chr6:143404000-143411600	Weak transcription	Liver	Liver
19	chr6:143404000-143417800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:143404000-143422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:143406800-143407600	Weak transcription	Placenta	Placenta

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