Variant report

Variant	rs6908577
Chromosome Location	chr6:143441756-143441757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12665439	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1334480	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334481	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804531	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3804535	0.88[ASN][1000 genomes]
rs60392452	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61636934	0.82[ASN][1000 genomes]
rs6900049	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6905621	0.96[ASN][1000 genomes]
rs6906195	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6910423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6914857	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6936192	0.82[ASN][1000 genomes]
rs7738387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386021	0.84[ASN][1000 genomes]
rs9399419	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9403447	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9496521	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9496524	0.82[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
2	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
3	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
6	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:143430200-143442200	Weak transcription	HSMMtube	muscle
8	chr6:143432000-143452000	Weak transcription	Ovary	ovary
9	chr6:143432800-143444000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:143433000-143445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:143433000-143448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:143433400-143446400	Weak transcription	NH-A	brain
14	chr6:143433400-143447600	Weak transcription	HMEC	breast
15	chr6:143435200-143444000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:143437000-143452000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:143439200-143445400	Weak transcription	K562	blood
18	chr6:143440200-143443000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:143440800-143445400	Weak transcription	Gastric	stomach
20	chr6:143440800-143452800	Weak transcription	Pancreas	Pancrea
21	chr6:143441000-143442200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:143441000-143445400	Weak transcription	Liver	Liver
23	chr6:143441000-143451800	Weak transcription	HepG2	liver
24	chr6:143441200-143479000	Weak transcription	NHLF	lung
25	chr6:143441400-143441800	Weak transcription	Fetal Intestine Small	intestine
26	chr6:143441400-143444000	Weak transcription	Fetal Intestine Large	intestine
27	chr6:143441600-143442400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:143441600-143442600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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