Variant report

Variant	rs7771808
Chromosome Location	chr6:143397486-143397487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143395899..143397557-chr6:143402457..143404145,2	MCF-7	breast:
2	chr6:143397337..143399278-chr6:143477046..143479172,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12665439	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1334478	0.81[JPT][hapmap]
rs1334480	0.81[CHB][hapmap]
rs17590726	0.81[JPT][hapmap]
rs3789782	0.86[JPT][hapmap]
rs3789783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3804526	0.86[JPT][hapmap]
rs3804527	0.85[JPT][hapmap]
rs3804528	0.83[CHB][hapmap]
rs3804531	0.83[CHB][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs3827797	0.86[JPT][hapmap]
rs4489173	0.82[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58851256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6900049	0.87[CHB][hapmap]
rs6905621	0.82[CHB][hapmap]
rs6906195	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6910423	0.87[CHB][hapmap];0.96[YRI][hapmap]
rs6910964	0.81[CHB][hapmap]
rs6914857	0.83[CHB][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs6936192	0.83[CHB][hapmap]
rs6938207	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs7738387	0.87[CHB][hapmap];0.92[YRI][hapmap]
rs7754388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774011	0.85[JPT][hapmap]
rs7775912	0.91[CHB][hapmap];0.85[JPT][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321887	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs9321888	0.86[JPT][hapmap]
rs9386021	0.87[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9399416	0.86[JPT][hapmap]
rs9399419	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9403434	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496511	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496521	0.83[CHB][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143384200-143407400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:143384200-143407600	Weak transcription	Psoas Muscle	Psoas
4	chr6:143386000-143403800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:143386400-143431800	Weak transcription	NHEK	skin
6	chr6:143389600-143400000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:143389600-143437000	Weak transcription	HSMM	muscle
8	chr6:143389800-143400000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:143389800-143418800	Weak transcription	Osteobl	bone
10	chr6:143394600-143398000	Weak transcription	Gastric	stomach
11	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:143396600-143402200	Enhancers	Liver	Liver
13	chr6:143396800-143397800	Weak transcription	Left Ventricle	heart
14	chr6:143396800-143399400	Weak transcription	Small Intestine	intestine
15	chr6:143396800-143400000	Weak transcription	Fetal Intestine Large	intestine
16	chr6:143397000-143397600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:143397000-143397600	Enhancers	HepG2	liver
18	chr6:143397200-143397600	Enhancers	Fetal Intestine Small	intestine
19	chr6:143397400-143431600	Weak transcription	HMEC	breast

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