Variant report

Variant	rs4896615
Chromosome Location	chr6:143359846-143359847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIVEP2-2	chr6:143359545-143359901	NONHSAT115334
2	lnc-AIG1-5	chr6:143358752-143362819	NONHSAT115335

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11155277	0.82[EUR][1000 genomes]
rs12662675	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12662882	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12663937	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12664681	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12664685	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334477	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1334478	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17590726	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1855559	0.87[ASN][1000 genomes]
rs1855560	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1889462	0.82[EUR][1000 genomes]
rs2142936	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2876541	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35073854	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35569003	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3761996	0.82[EUR][1000 genomes]
rs3789782	0.84[ASN][1000 genomes]
rs3804526	0.84[ASN][1000 genomes]
rs3804527	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3811093	0.83[ASN][1000 genomes]
rs3827797	0.84[ASN][1000 genomes]
rs4896614	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896617	0.84[ASN][1000 genomes]
rs59463222	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59873234	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59974378	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570545	0.84[ASN][1000 genomes]
rs6902732	0.84[ASN][1000 genomes]
rs6906414	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6938207	0.82[ASN][1000 genomes]
rs73777857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743474	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7750571	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7774011	0.84[ASN][1000 genomes]
rs7775419	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321887	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9321888	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9321889	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9390046	0.83[ASN][1000 genomes]
rs9399416	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403430	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403432	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143356800-143360000	Weak transcription	GM12878-XiMat	blood
2	chr6:143356800-143377000	Weak transcription	HepG2	liver
3	chr6:143359000-143360000	Weak transcription	K562	blood

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