Variant report

Variant	rs4896618
Chromosome Location	chr6:143376126-143376127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143375950..143378205-chr6:143555143..143557355,2	K562	blood:
2	chr6:143372247..143374306-chr6:143375405..143377390,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1334478	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs17590726	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1855559	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1855560	0.85[ASN][1000 genomes]
rs2142936	0.80[ASN][1000 genomes]
rs3789782	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3789783	0.85[JPT][hapmap];0.91[MEX][hapmap]
rs3804526	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3804527	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3811093	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3827797	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4489173	0.94[JPT][hapmap]
rs4896614	0.83[ASN][1000 genomes]
rs4896617	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6570545	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6902732	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6906414	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6938207	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7771808	0.85[JPT][hapmap]
rs7774011	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9321887	0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs9321888	0.87[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs9321889	0.85[ASN][1000 genomes]
rs9390046	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9399416	0.87[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs9403430	0.81[ASN][1000 genomes]
rs9403432	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9496511	0.85[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4896618	AIG1	cis	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143356800-143377000	Weak transcription	HepG2	liver
2	chr6:143372000-143380400	Weak transcription	K562	blood
3	chr6:143373600-143380800	Weak transcription	GM12878-XiMat	blood
4	chr6:143374800-143380800	Weak transcription	Primary T cells from cord blood	blood
5	chr6:143375200-143380000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:143375200-143381200	Weak transcription	Aorta	Aorta
7	chr6:143375600-143379600	Weak transcription	Fetal Intestine Small	intestine
8	chr6:143375800-143377200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:143375800-143377200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:143376000-143380600	Weak transcription	Adipose Nuclei	Adipose

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