Variant report

Variant	rs28844646
Chromosome Location	chr3:100292412-100292413
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10428254	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10511187	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10511188	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11923487	0.89[ASN][1000 genomes]
rs12630904	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12634935	1.00[AMR][1000 genomes]
rs12635503	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12636790	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12637319	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1305373	0.82[AMR][1000 genomes]
rs1305375	0.82[AMR][1000 genomes]
rs13320223	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13321761	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1842732	0.97[AMR][1000 genomes]
rs28722928	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4077302	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4129205	0.89[ASN][1000 genomes]
rs4928049	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57075146	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57404153	0.89[ASN][1000 genomes]
rs57671998	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58618663	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58740980	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58789183	0.81[AMR][1000 genomes]
rs60151360	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60255102	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60375749	0.99[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61403861	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs653530	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs661266	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66512877	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66627492	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66644999	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67014477	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6763638	0.89[ASN][1000 genomes]
rs6767089	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6768258	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6770693	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6771421	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6783630	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6785969	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6796541	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68019545	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6803109	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72929220	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73141201	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7426462	0.89[ASN][1000 genomes]
rs7427360	0.89[ASN][1000 genomes]
rs7429915	0.86[ASN][1000 genomes]
rs7430001	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7432710	0.89[ASN][1000 genomes]
rs7433875	0.89[ASN][1000 genomes]
rs7617909	0.89[ASN][1000 genomes]
rs7618159	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7625717	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7647499	0.84[ASN][1000 genomes]
rs9290097	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9290098	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9290099	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9290100	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9790050	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9790137	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9790219	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9823159	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9825818	0.89[ASN][1000 genomes]
rs9829641	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9829972	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9831654	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9831783	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9831984	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9834474	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9838918	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9842488	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9843647	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9843654	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9856061	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9857812	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9860005	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9865776	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9870803	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9874401	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9880036	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9881835	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100265800-100300600	Weak transcription	HepG2	liver
3	chr3:100273400-100297000	Weak transcription	Pancreas	Pancrea
4	chr3:100276800-100309200	Weak transcription	NH-A	brain
5	chr3:100277200-100298000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:100277600-100304200	Weak transcription	Ovary	ovary
7	chr3:100278200-100305800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:100281200-100300200	Weak transcription	Osteobl	bone
9	chr3:100282400-100296800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:100282800-100296800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:100283400-100298000	Weak transcription	HSMMtube	muscle
12	chr3:100283400-100300400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:100283600-100298400	Weak transcription	HSMM	muscle
14	chr3:100283800-100299800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:100288000-100297200	Weak transcription	Fetal Intestine Large	intestine
16	chr3:100288200-100298600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:100289400-100299400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:100289600-100297000	Weak transcription	Fetal Stomach	stomach
19	chr3:100289600-100300200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:100289600-100301000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:100289800-100298600	Weak transcription	Aorta	Aorta
22	chr3:100289800-100298800	Weak transcription	Fetal Lung	lung
23	chr3:100290000-100293400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr3:100290200-100294800	Weak transcription	Liver	Liver
25	chr3:100290200-100295800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:100290200-100296000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:100290200-100297400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:100290200-100300000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links