Variant report

Variant	rs9843647
Chromosome Location	chr3:100297758-100297759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs10428254	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10511187	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10511188	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1165521	0.93[AMR][1000 genomes]
rs11706258	0.82[ASN][1000 genomes]
rs11710281	0.83[ASN][1000 genomes]
rs11713258	0.81[ASN][1000 genomes]
rs11715555	0.81[ASN][1000 genomes]
rs11719592	0.81[ASN][1000 genomes]
rs11923487	0.96[ASN][1000 genomes]
rs12630904	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634314	0.81[ASN][1000 genomes]
rs12634317	0.81[ASN][1000 genomes]
rs12634935	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12635025	0.81[ASN][1000 genomes]
rs12635026	0.81[ASN][1000 genomes]
rs12635503	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12636452	0.82[ASN][1000 genomes]
rs12636790	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12637319	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1305373	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1305375	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13320223	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321761	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1842732	0.82[ASN][1000 genomes]
rs28722928	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28844646	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4077302	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129205	0.96[ASN][1000 genomes]
rs4928048	0.81[ASN][1000 genomes]
rs4928049	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928063	0.82[ASN][1000 genomes]
rs4928064	0.81[ASN][1000 genomes]
rs4928065	0.81[ASN][1000 genomes]
rs4928110	0.82[ASN][1000 genomes]
rs4928111	0.82[ASN][1000 genomes]
rs4928112	0.82[ASN][1000 genomes]
rs55764247	0.82[ASN][1000 genomes]
rs55789829	0.82[ASN][1000 genomes]
rs56736439	0.82[ASN][1000 genomes]
rs57075146	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57404153	0.96[ASN][1000 genomes]
rs57671998	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58618663	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58689996	0.82[ASN][1000 genomes]
rs58740980	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58789183	0.84[ASN][1000 genomes]
rs59281247	0.80[ASN][1000 genomes]
rs60151360	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60255102	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60375749	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60511852	0.82[ASN][1000 genomes]
rs61403861	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274560	0.82[ASN][1000 genomes]
rs62274561	0.82[ASN][1000 genomes]
rs62274575	0.81[ASN][1000 genomes]
rs62278361	0.81[ASN][1000 genomes]
rs6441328	0.81[ASN][1000 genomes]
rs6441329	0.81[ASN][1000 genomes]
rs653530	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs661266	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66512877	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66627492	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66644999	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66747627	0.82[ASN][1000 genomes]
rs66828943	0.82[ASN][1000 genomes]
rs67014477	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67348505	0.82[ASN][1000 genomes]
rs6763638	0.96[ASN][1000 genomes]
rs6767089	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768258	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6770693	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6771421	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6783630	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6785969	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6796541	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6799879	0.81[ASN][1000 genomes]
rs6799882	0.81[ASN][1000 genomes]
rs6799992	0.81[ASN][1000 genomes]
rs68019545	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802787	0.81[ASN][1000 genomes]
rs6803109	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6807804	0.81[ASN][1000 genomes]
rs6808426	0.82[ASN][1000 genomes]
rs72929220	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73141201	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7426462	0.96[ASN][1000 genomes]
rs7427360	0.96[ASN][1000 genomes]
rs7429915	0.93[ASN][1000 genomes]
rs7430001	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7432710	0.96[ASN][1000 genomes]
rs7433589	0.81[ASN][1000 genomes]
rs7433875	0.96[ASN][1000 genomes]
rs7611100	0.85[ASN][1000 genomes]
rs7617909	0.96[ASN][1000 genomes]
rs7618030	0.80[ASN][1000 genomes]
rs7618159	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7622658	0.81[ASN][1000 genomes]
rs7625717	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7631877	0.81[ASN][1000 genomes]
rs7645690	0.81[ASN][1000 genomes]
rs7645700	0.81[ASN][1000 genomes]
rs7647499	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7650265	0.82[ASN][1000 genomes]
rs7653126	0.82[ASN][1000 genomes]
rs9290097	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9290098	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9290099	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9290100	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9790050	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9790137	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9790219	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9814643	0.82[ASN][1000 genomes]
rs9818800	0.81[ASN][1000 genomes]
rs9819246	0.82[ASN][1000 genomes]
rs9820745	0.82[ASN][1000 genomes]
rs9823159	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9825818	0.96[ASN][1000 genomes]
rs9829641	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9829972	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9831654	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831783	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9831984	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9834474	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9834776	0.81[ASN][1000 genomes]
rs9838918	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9842488	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843498	0.82[ASN][1000 genomes]
rs9843654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845649	0.81[ASN][1000 genomes]
rs9855549	0.82[ASN][1000 genomes]
rs9856061	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9857812	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9860005	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9865411	0.81[ASN][1000 genomes]
rs9865776	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870803	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9874401	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9880036	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9881835	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100265800-100300600	Weak transcription	HepG2	liver
3	chr3:100276800-100309200	Weak transcription	NH-A	brain
4	chr3:100277200-100298000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:100277600-100304200	Weak transcription	Ovary	ovary
6	chr3:100278200-100305800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:100281200-100300200	Weak transcription	Osteobl	bone
8	chr3:100283400-100298000	Weak transcription	HSMMtube	muscle
9	chr3:100283400-100300400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:100283600-100298400	Weak transcription	HSMM	muscle
11	chr3:100283800-100299800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:100288200-100298600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:100289400-100299400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:100289600-100300200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:100289600-100301000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:100289800-100298600	Weak transcription	Aorta	Aorta
17	chr3:100289800-100298800	Weak transcription	Fetal Lung	lung
18	chr3:100290200-100300000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:100294800-100297800	Enhancers	Liver	Liver
20	chr3:100295600-100298800	Strong transcription	Placenta Amnion	Placenta Amnion
21	chr3:100296000-100298800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:100297200-100300600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:100297400-100297800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:100297400-100300400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:100297600-100298400	Weak transcription	Pancreas	Pancrea
26	chr3:100297600-100298800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:100297600-100303400	Weak transcription	Fetal Stomach	stomach

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