Variant report

Variant	rs4928049
Chromosome Location	chr3:100286456-100286457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 156 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10428254	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10511187	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10511188	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10936221	0.83[CHB][hapmap]
rs11706258	0.83[ASN][1000 genomes]
rs11710281	0.84[ASN][1000 genomes]
rs11713258	0.83[ASN][1000 genomes]
rs11715555	0.83[ASN][1000 genomes]
rs11719592	0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11923487	0.96[ASN][1000 genomes]
rs12630904	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12634314	0.83[ASN][1000 genomes]
rs12634317	0.89[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12634935	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12635025	0.83[ASN][1000 genomes]
rs12635026	0.83[ASN][1000 genomes]
rs12635503	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12636452	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12636790	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12637319	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12639465	0.83[CHB][hapmap]
rs1305373	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1305375	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13320223	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13321761	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1842732	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28722928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844646	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4077302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129205	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4928048	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4928063	0.83[ASN][1000 genomes]
rs4928064	0.83[ASN][1000 genomes]
rs4928065	0.83[ASN][1000 genomes]
rs4928110	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4928111	0.89[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4928112	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs55764247	0.83[ASN][1000 genomes]
rs55789829	0.83[ASN][1000 genomes]
rs56736439	0.83[ASN][1000 genomes]
rs57075146	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57404153	0.96[ASN][1000 genomes]
rs57671998	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58618663	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58689996	0.83[ASN][1000 genomes]
rs58740980	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58789183	0.86[ASN][1000 genomes]
rs59281247	0.82[ASN][1000 genomes]
rs60151360	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60255102	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60375749	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60511852	0.83[ASN][1000 genomes]
rs61403861	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274560	0.83[ASN][1000 genomes]
rs62274561	0.83[ASN][1000 genomes]
rs62274575	0.83[ASN][1000 genomes]
rs62278361	0.82[ASN][1000 genomes]
rs6441300	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs6441308	0.83[CHB][hapmap]
rs6441316	0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6441317	0.81[ASN][1000 genomes]
rs6441318	0.81[ASN][1000 genomes]
rs6441328	0.89[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs6441329	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs653530	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs661266	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66512877	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66627492	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66644999	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66747627	0.83[ASN][1000 genomes]
rs66828943	0.83[ASN][1000 genomes]
rs67014477	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67348505	0.83[ASN][1000 genomes]
rs6763638	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6767089	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6768258	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6770693	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6771421	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6777810	0.83[CHB][hapmap]
rs6780654	0.83[CHB][hapmap]
rs6783630	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6785969	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6792014	0.83[CHB][hapmap]
rs6796541	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799879	0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6799882	0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6799992	0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs68019545	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6802787	0.89[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs6803109	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805186	0.81[ASN][1000 genomes]
rs6807804	0.89[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs6808426	0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs72929220	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141201	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7426414	0.89[CHB][hapmap]
rs7426462	0.96[ASN][1000 genomes]
rs7427360	0.96[ASN][1000 genomes]
rs7429277	0.89[CHB][hapmap]
rs7429915	0.94[CHB][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs7430001	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7431846	0.89[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7432710	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7433589	0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7433875	0.96[ASN][1000 genomes]
rs7611100	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7617909	0.96[ASN][1000 genomes]
rs7618030	0.82[ASN][1000 genomes]
rs7618159	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7622658	0.89[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7625717	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631877	0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7644235	0.81[ASN][1000 genomes]
rs7645690	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs7645700	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7647499	0.89[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs7650265	0.83[ASN][1000 genomes]
rs7653126	0.83[ASN][1000 genomes]
rs7653196	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs9290097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9290098	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9290099	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9290100	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9790050	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9790137	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9790219	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9809934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9814643	0.83[ASN][1000 genomes]
rs9818800	0.81[ASN][1000 genomes]
rs9819246	0.94[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs9820745	0.83[ASN][1000 genomes]
rs9823159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9825818	0.96[ASN][1000 genomes]
rs9829641	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9829972	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9831654	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9831783	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9831984	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9834474	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9834776	0.81[ASN][1000 genomes]
rs9838918	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9842488	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9843498	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9843647	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9843654	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9845649	0.83[ASN][1000 genomes]
rs9855549	0.89[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs9856061	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9857812	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9860005	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9865411	0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs9865776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870803	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874401	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9880036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881835	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100253800-100289000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:100253800-100289000	Weak transcription	Aorta	Aorta
4	chr3:100265800-100300600	Weak transcription	HepG2	liver
5	chr3:100270800-100291000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:100273400-100288600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:100273400-100297000	Weak transcription	Pancreas	Pancrea
8	chr3:100276800-100309200	Weak transcription	NH-A	brain
9	chr3:100277200-100298000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:100277600-100304200	Weak transcription	Ovary	ovary
11	chr3:100278200-100305800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:100280800-100289000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:100281000-100287800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:100281200-100300200	Weak transcription	Osteobl	bone
15	chr3:100281600-100287600	Weak transcription	Fetal Lung	lung
16	chr3:100281600-100289200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:100281800-100287800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:100282000-100291600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:100282200-100287600	Weak transcription	Liver	Liver
20	chr3:100282400-100287800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:100282400-100296800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:100282600-100287800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr3:100282600-100289000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:100282800-100296800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:100283200-100287400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:100283400-100298000	Weak transcription	HSMMtube	muscle
27	chr3:100283400-100300400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:100283600-100298400	Weak transcription	HSMM	muscle
29	chr3:100283800-100288600	Weak transcription	Fetal Stomach	stomach
30	chr3:100283800-100299800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr3:100284200-100287200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:100284600-100290400	Weak transcription	Psoas Muscle	Psoas

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