Variant report

Variant	rs7644235
Chromosome Location	chr3:100279470-100279471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100267261..100269678-chr3:100279015..100280671,2	MCF-7	breast:
2	chr3:100223819..100226546-chr3:100278387..100280619,2	MCF-7	breast:
3	chr3:100279404..100280905-chr3:100281627..100283276,2	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs11706258	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11710281	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11713258	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11715555	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11719592	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11923487	0.82[ASN][1000 genomes]
rs12629511	0.85[AFR][1000 genomes]
rs12634314	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12634317	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12635025	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12635026	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12636452	0.92[ASN][1000 genomes]
rs13093980	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28722928	0.81[ASN][1000 genomes]
rs4077302	0.81[ASN][1000 genomes]
rs4129205	0.82[ASN][1000 genomes]
rs4928048	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928049	0.81[ASN][1000 genomes]
rs4928063	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4928064	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928065	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928110	0.92[ASN][1000 genomes]
rs4928111	0.92[ASN][1000 genomes]
rs4928112	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55764247	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55789829	0.92[ASN][1000 genomes]
rs56736439	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57075146	0.81[ASN][1000 genomes]
rs57404153	0.82[ASN][1000 genomes]
rs57671998	0.81[ASN][1000 genomes]
rs58689996	0.92[ASN][1000 genomes]
rs58789183	0.94[ASN][1000 genomes]
rs59281247	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60375749	0.81[ASN][1000 genomes]
rs60511852	0.92[ASN][1000 genomes]
rs61403861	0.81[ASN][1000 genomes]
rs62274560	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62274561	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62274575	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278361	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441316	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441317	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441318	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441321	0.90[ASN][1000 genomes]
rs6441328	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6441329	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66747627	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66828943	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67348505	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6763638	0.82[ASN][1000 genomes]
rs6796541	0.81[ASN][1000 genomes]
rs6799879	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6799882	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6799992	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6802787	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6803109	0.81[ASN][1000 genomes]
rs6805186	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6807804	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6808426	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72929220	0.81[ASN][1000 genomes]
rs7426462	0.82[ASN][1000 genomes]
rs7427360	0.82[ASN][1000 genomes]
rs7429277	0.85[ASN][1000 genomes]
rs7429915	0.81[ASN][1000 genomes]
rs7431846	0.89[ASN][1000 genomes]
rs7432710	0.82[ASN][1000 genomes]
rs7433589	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7433875	0.82[ASN][1000 genomes]
rs7611100	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7617909	0.82[ASN][1000 genomes]
rs7618030	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7622658	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7625717	0.81[ASN][1000 genomes]
rs7631877	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7645690	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7645700	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7647492	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7647499	0.87[ASN][1000 genomes]
rs7650265	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7653126	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9814643	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9819246	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9820745	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9823159	0.81[ASN][1000 genomes]
rs9825818	0.82[ASN][1000 genomes]
rs9843498	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9845649	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9855549	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9865411	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9865776	0.81[ASN][1000 genomes]
rs9870803	0.81[ASN][1000 genomes]
rs9880036	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7644235	TMEM45A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100253800-100289000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:100253800-100289000	Weak transcription	Aorta	Aorta
4	chr3:100265800-100300600	Weak transcription	HepG2	liver
5	chr3:100268400-100282200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:100270800-100291000	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:100273400-100288600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:100273400-100297000	Weak transcription	Pancreas	Pancrea
9	chr3:100274800-100279600	Weak transcription	Liver	Liver
10	chr3:100276000-100280200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr3:100276000-100282600	Weak transcription	HSMMtube	muscle
12	chr3:100276200-100280000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr3:100276200-100280000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr3:100276800-100279800	Weak transcription	HSMM	muscle
15	chr3:100276800-100280000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:100276800-100282600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:100276800-100309200	Weak transcription	NH-A	brain
18	chr3:100277000-100279600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:100277000-100279600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:100277000-100279800	Weak transcription	HMEC	breast
21	chr3:100277000-100279800	Weak transcription	NHEK	skin
22	chr3:100277000-100280000	Weak transcription	NHDF-Ad	bronchial
23	chr3:100277000-100280200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:100277000-100280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:100277000-100281800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:100277200-100298000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr3:100277400-100280400	Weak transcription	Hela-S3	cervix
28	chr3:100277600-100279800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:100277600-100281000	Enhancers	Fetal Lung	lung
30	chr3:100277600-100304200	Weak transcription	Ovary	ovary
31	chr3:100277800-100279800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:100277800-100280000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:100278000-100279800	Weak transcription	NHLF	lung
34	chr3:100278200-100281800	Weak transcription	Fetal Heart	heart
35	chr3:100278200-100305800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:100278600-100281400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:100279000-100281600	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr3:100279000-100281800	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr3:100279200-100281200	Enhancers	Fetal Kidney	kidney
40	chr3:100279400-100281200	Enhancers	Osteobl	bone
41	chr3:100279400-100281400	Enhancers	Fetal Stomach	stomach

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