Variant report

Variant	rs7432710
Chromosome Location	chr3:100289131-100289132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 154 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10428254	0.81[ASN][1000 genomes]
rs10511187	0.80[ASN][1000 genomes]
rs10511188	0.80[ASN][1000 genomes]
rs10936264	0.80[ASN][1000 genomes]
rs11706258	0.84[ASN][1000 genomes]
rs11710281	0.85[ASN][1000 genomes]
rs11713258	0.84[ASN][1000 genomes]
rs11715555	0.84[ASN][1000 genomes]
rs11719592	0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs11923487	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12630904	0.96[ASN][1000 genomes]
rs12634314	0.84[ASN][1000 genomes]
rs12634317	0.84[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12634935	0.80[ASN][1000 genomes]
rs12635025	0.84[ASN][1000 genomes]
rs12635026	0.84[ASN][1000 genomes]
rs12635503	0.80[ASN][1000 genomes]
rs12636452	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs12636790	0.80[ASN][1000 genomes]
rs12637319	0.80[ASN][1000 genomes]
rs1305373	0.80[ASN][1000 genomes]
rs1305375	0.80[ASN][1000 genomes]
rs13069547	0.82[ASN][1000 genomes]
rs13320223	0.96[ASN][1000 genomes]
rs13321761	0.80[ASN][1000 genomes]
rs1471375	0.93[YRI][hapmap]
rs1531772	0.92[YRI][hapmap]
rs2169554	0.83[ASN][1000 genomes]
rs28722928	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28844646	0.89[ASN][1000 genomes]
rs4077302	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4129205	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928048	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4928049	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4928063	0.84[ASN][1000 genomes]
rs4928064	0.84[ASN][1000 genomes]
rs4928065	0.84[ASN][1000 genomes]
rs4928110	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs4928111	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4928112	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs55764247	0.84[ASN][1000 genomes]
rs56736439	0.84[ASN][1000 genomes]
rs57075146	0.96[ASN][1000 genomes]
rs57404153	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57671998	0.96[ASN][1000 genomes]
rs58740980	0.95[ASN][1000 genomes]
rs58789183	0.82[ASN][1000 genomes]
rs59281247	0.83[ASN][1000 genomes]
rs60151360	0.81[ASN][1000 genomes]
rs60255102	0.95[ASN][1000 genomes]
rs60375749	0.96[ASN][1000 genomes]
rs61403861	0.96[ASN][1000 genomes]
rs619149	0.82[ASN][1000 genomes]
rs62274560	0.84[ASN][1000 genomes]
rs62274561	0.84[ASN][1000 genomes]
rs62274575	0.84[ASN][1000 genomes]
rs62278361	0.83[ASN][1000 genomes]
rs6441300	0.80[JPT][hapmap]
rs6441316	0.83[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6441317	0.82[ASN][1000 genomes]
rs6441318	0.82[ASN][1000 genomes]
rs6441328	0.84[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs6441329	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs653530	0.80[ASN][1000 genomes]
rs661266	0.80[ASN][1000 genomes]
rs66512877	0.96[ASN][1000 genomes]
rs66627492	0.95[ASN][1000 genomes]
rs66644999	0.95[ASN][1000 genomes]
rs66747627	0.84[ASN][1000 genomes]
rs66828943	0.84[ASN][1000 genomes]
rs67014477	0.96[ASN][1000 genomes]
rs67348505	0.84[ASN][1000 genomes]
rs6763638	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767089	0.96[ASN][1000 genomes]
rs6768258	0.80[ASN][1000 genomes]
rs6770693	0.80[ASN][1000 genomes]
rs6771421	0.80[ASN][1000 genomes]
rs6773148	0.83[ASN][1000 genomes]
rs6783630	0.80[ASN][1000 genomes]
rs6785969	0.80[ASN][1000 genomes]
rs6786853	0.83[ASN][1000 genomes]
rs6796541	0.96[ASN][1000 genomes]
rs6799879	0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6799882	0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6799992	0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs68019545	0.96[ASN][1000 genomes]
rs6802787	0.84[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs6803109	0.96[ASN][1000 genomes]
rs6805186	0.82[ASN][1000 genomes]
rs6807804	0.84[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs6808426	0.84[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs72929220	0.96[ASN][1000 genomes]
rs73141201	0.96[ASN][1000 genomes]
rs7426414	0.84[CHB][hapmap]
rs7426462	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427360	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7429277	0.84[CHB][hapmap]
rs7429915	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7430001	0.89[ASN][1000 genomes]
rs7431846	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7433589	0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7433875	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611100	0.92[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7617909	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618030	0.83[ASN][1000 genomes]
rs7618159	0.93[ASN][1000 genomes]
rs7622658	0.84[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7625717	0.96[ASN][1000 genomes]
rs7631877	0.84[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7644235	0.82[ASN][1000 genomes]
rs7645690	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs7645700	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7647492	0.82[CEU][hapmap]
rs7647499	0.84[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs7650265	0.84[ASN][1000 genomes]
rs7653126	0.84[ASN][1000 genomes]
rs7653196	0.80[JPT][hapmap]
rs900235	0.87[YRI][hapmap]
rs9290097	0.81[ASN][1000 genomes]
rs9290098	0.80[ASN][1000 genomes]
rs9290099	0.80[ASN][1000 genomes]
rs9290100	0.80[ASN][1000 genomes]
rs9790050	0.80[ASN][1000 genomes]
rs9790137	0.80[ASN][1000 genomes]
rs9790219	0.80[ASN][1000 genomes]
rs9809934	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9814643	0.84[ASN][1000 genomes]
rs9818800	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9819246	0.88[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9820745	0.84[ASN][1000 genomes]
rs9823159	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9825818	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829641	0.81[ASN][1000 genomes]
rs9831654	0.96[ASN][1000 genomes]
rs9831783	0.92[ASN][1000 genomes]
rs9831984	0.92[ASN][1000 genomes]
rs9834474	0.81[ASN][1000 genomes]
rs9834776	0.85[ASN][1000 genomes]
rs9842488	0.96[ASN][1000 genomes]
rs9843498	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9843647	0.96[ASN][1000 genomes]
rs9843654	0.96[ASN][1000 genomes]
rs9845649	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9853434	0.83[ASN][1000 genomes]
rs9855549	0.84[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9856338	0.80[ASN][1000 genomes]
rs9857812	0.95[ASN][1000 genomes]
rs9860005	0.80[ASN][1000 genomes]
rs9865411	0.84[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9865776	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9870803	0.96[ASN][1000 genomes]
rs9874401	0.81[ASN][1000 genomes]
rs9880036	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9881835	0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7432710	TMEM45A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100265800-100300600	Weak transcription	HepG2	liver
3	chr3:100270800-100291000	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:100273400-100297000	Weak transcription	Pancreas	Pancrea
5	chr3:100276800-100309200	Weak transcription	NH-A	brain
6	chr3:100277200-100298000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:100277600-100304200	Weak transcription	Ovary	ovary
8	chr3:100278200-100305800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:100281200-100300200	Weak transcription	Osteobl	bone
10	chr3:100281600-100289200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:100282000-100291600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:100282400-100296800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:100282800-100296800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:100283400-100298000	Weak transcription	HSMMtube	muscle
15	chr3:100283400-100300400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:100283600-100298400	Weak transcription	HSMM	muscle
17	chr3:100283800-100299800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:100284600-100290400	Weak transcription	Psoas Muscle	Psoas
19	chr3:100287200-100290200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:100287400-100290200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:100287600-100289800	Strong transcription	Fetal Lung	lung
22	chr3:100287600-100290200	Strong transcription	Liver	Liver
23	chr3:100287800-100289400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:100287800-100290000	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr3:100287800-100290200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:100287800-100290600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:100288000-100297200	Weak transcription	Fetal Intestine Large	intestine
28	chr3:100288200-100298600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:100288600-100289400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr3:100288600-100289600	Strong transcription	Fetal Stomach	stomach
31	chr3:100289000-100289600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:100289000-100289600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:100289000-100289800	Strong transcription	Aorta	Aorta
34	chr3:100289000-100290000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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