Variant report

Variant	rs6441329
Chromosome Location	chr3:100278016-100278017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100273925..100276439-chr3:100276938..100279172,3	K562	blood:
2	chr3:100273925..100275471-chr3:100276938..100278564,2	K562	blood:

Extended variants
information (count: 121 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10936221	0.94[CHB][hapmap]
rs11706258	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11710281	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11713258	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715555	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719592	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11923487	0.84[ASN][1000 genomes]
rs12629511	0.86[AFR][1000 genomes]
rs12630904	0.81[ASN][1000 genomes]
rs12634314	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12635025	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12635026	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12636452	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12639465	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs13093980	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13320223	0.81[ASN][1000 genomes]
rs28722928	0.89[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs3924054	0.83[CHB][hapmap];0.85[CHD][hapmap]
rs4075020	0.88[CHB][hapmap]
rs4077302	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4129205	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4928048	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928049	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4928063	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928064	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928065	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928110	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4928111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4928112	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55764247	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55789829	0.93[ASN][1000 genomes]
rs56736439	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57075146	0.83[ASN][1000 genomes]
rs57404153	0.84[ASN][1000 genomes]
rs57671998	0.83[ASN][1000 genomes]
rs58689996	0.93[ASN][1000 genomes]
rs58740980	0.81[ASN][1000 genomes]
rs58789183	0.95[ASN][1000 genomes]
rs59281247	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60255102	0.81[ASN][1000 genomes]
rs60375749	0.83[ASN][1000 genomes]
rs60511852	0.93[ASN][1000 genomes]
rs61403861	0.83[ASN][1000 genomes]
rs62274560	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274561	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274575	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278361	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6441300	0.94[CHB][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs6441308	0.94[CHB][hapmap]
rs6441316	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441317	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441318	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441321	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441328	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66512877	0.81[ASN][1000 genomes]
rs66644999	0.81[ASN][1000 genomes]
rs66747627	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66828943	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67014477	0.81[ASN][1000 genomes]
rs67348505	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6763638	0.83[CHB][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6767089	0.81[ASN][1000 genomes]
rs6777810	0.94[CHB][hapmap]
rs6780654	0.94[CHB][hapmap]
rs6792014	0.94[CHB][hapmap]
rs6796541	0.83[ASN][1000 genomes]
rs6799879	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6799882	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6799992	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68019545	0.81[ASN][1000 genomes]
rs6802787	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6803109	0.83[ASN][1000 genomes]
rs6805186	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6807804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808426	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72929220	0.83[ASN][1000 genomes]
rs73141201	0.81[ASN][1000 genomes]
rs7426462	0.84[ASN][1000 genomes]
rs7426815	0.89[CHB][hapmap]
rs7427360	0.84[ASN][1000 genomes]
rs7429277	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7429392	0.89[CHB][hapmap]
rs7429915	0.83[CHB][hapmap];0.82[GIH][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs7431846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7432710	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7433589	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7433875	0.84[ASN][1000 genomes]
rs7611100	0.89[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7617909	0.84[ASN][1000 genomes]
rs7618030	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7622658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625717	0.83[ASN][1000 genomes]
rs7631877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644235	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7645690	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7645700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647492	0.84[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7647499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7650265	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7653126	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7653196	0.94[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs9809934	0.89[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs9814643	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9819246	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9820745	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9823159	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9825818	0.84[ASN][1000 genomes]
rs9831654	0.81[ASN][1000 genomes]
rs9842488	0.81[ASN][1000 genomes]
rs9843498	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9843647	0.81[ASN][1000 genomes]
rs9843654	0.81[ASN][1000 genomes]
rs9845649	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855549	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9857812	0.81[ASN][1000 genomes]
rs9865411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865776	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9870803	0.83[ASN][1000 genomes]
rs9880036	0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9881835	0.81[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6441329	TFG	cis	multi-tissue	Pritchard
rs6441329	TMEM45A	cis	parietal	SCAN
rs6441329	OR5K4	cis	cerebellum	SCAN
rs6441329	TMEM45A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100253800-100289000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:100253800-100289000	Weak transcription	Aorta	Aorta
4	chr3:100265800-100300600	Weak transcription	HepG2	liver
5	chr3:100268400-100282200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:100270800-100291000	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:100273400-100288600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:100273400-100297000	Weak transcription	Pancreas	Pancrea
9	chr3:100274800-100279600	Weak transcription	Liver	Liver
10	chr3:100275000-100278200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:100276000-100280200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:100276000-100282600	Weak transcription	HSMMtube	muscle
13	chr3:100276200-100280000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr3:100276200-100280000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:100276800-100278200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:100276800-100279400	Weak transcription	Osteobl	bone
17	chr3:100276800-100279800	Weak transcription	HSMM	muscle
18	chr3:100276800-100280000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:100276800-100282600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:100276800-100309200	Weak transcription	NH-A	brain
21	chr3:100277000-100278200	Enhancers	Fetal Heart	heart
22	chr3:100277000-100279600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:100277000-100279600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:100277000-100279800	Weak transcription	HMEC	breast
25	chr3:100277000-100279800	Weak transcription	NHEK	skin
26	chr3:100277000-100280000	Weak transcription	NHDF-Ad	bronchial
27	chr3:100277000-100280200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:100277000-100280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:100277000-100281800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr3:100277200-100298000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr3:100277400-100280400	Weak transcription	Hela-S3	cervix
32	chr3:100277600-100279800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:100277600-100281000	Enhancers	Fetal Lung	lung
34	chr3:100277600-100304200	Weak transcription	Ovary	ovary
35	chr3:100277800-100279800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:100277800-100280000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:100278000-100278800	Weak transcription	Fetal Stomach	stomach
38	chr3:100278000-100279800	Weak transcription	NHLF	lung

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