Variant report

Variant	rs4928111
Chromosome Location	chr3:100252035-100252036
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10936221	0.94[CHB][hapmap]
rs11706258	0.95[ASN][1000 genomes]
rs11710281	0.95[ASN][1000 genomes]
rs11713258	0.93[ASN][1000 genomes]
rs11715555	0.93[ASN][1000 genomes]
rs11719592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12630904	0.82[ASN][1000 genomes]
rs12631075	0.81[AMR][1000 genomes]
rs12634314	0.93[ASN][1000 genomes]
rs12634317	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs12635025	0.93[ASN][1000 genomes]
rs12635026	0.93[ASN][1000 genomes]
rs12636452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639465	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs13093980	0.88[ASN][1000 genomes]
rs13320223	0.82[ASN][1000 genomes]
rs28722928	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3924054	0.83[CHB][hapmap];0.90[YRI][hapmap]
rs4075020	0.88[CHB][hapmap]
rs4077302	0.89[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs4129205	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4928048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4928049	0.89[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4928063	0.95[ASN][1000 genomes]
rs4928064	0.93[ASN][1000 genomes]
rs4928065	0.93[ASN][1000 genomes]
rs4928097	0.81[AMR][1000 genomes]
rs4928110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928112	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs55764247	0.95[ASN][1000 genomes]
rs55789829	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56736439	0.95[ASN][1000 genomes]
rs57075146	0.83[ASN][1000 genomes]
rs57671998	0.83[ASN][1000 genomes]
rs58689996	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58740980	0.82[ASN][1000 genomes]
rs58789183	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59281247	0.92[ASN][1000 genomes]
rs59299896	0.82[AMR][1000 genomes]
rs60255102	0.81[ASN][1000 genomes]
rs60272820	0.81[AMR][1000 genomes]
rs60375749	0.83[ASN][1000 genomes]
rs60511852	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61403861	0.83[ASN][1000 genomes]
rs62274560	0.95[ASN][1000 genomes]
rs62274561	0.95[ASN][1000 genomes]
rs62274575	0.93[ASN][1000 genomes]
rs62276520	0.81[AMR][1000 genomes]
rs62276522	0.81[AMR][1000 genomes]
rs62276523	0.81[AMR][1000 genomes]
rs62278361	0.97[ASN][1000 genomes]
rs6441300	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs6441308	0.94[CHB][hapmap]
rs6441316	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6441317	0.96[ASN][1000 genomes]
rs6441318	0.96[ASN][1000 genomes]
rs6441321	0.89[ASN][1000 genomes]
rs6441328	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6441329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs66512877	0.82[ASN][1000 genomes]
rs66627492	0.81[ASN][1000 genomes]
rs66644999	0.82[ASN][1000 genomes]
rs66747627	0.95[ASN][1000 genomes]
rs66791174	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs66828943	0.95[ASN][1000 genomes]
rs67014477	0.82[ASN][1000 genomes]
rs67348505	0.95[ASN][1000 genomes]
rs6763638	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6767089	0.82[ASN][1000 genomes]
rs67774605	0.81[AMR][1000 genomes]
rs6777810	0.94[CHB][hapmap]
rs6780654	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs6792014	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs6796541	0.83[ASN][1000 genomes]
rs6798264	0.87[AMR][1000 genomes]
rs6799879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6799882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6799992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs68019545	0.82[ASN][1000 genomes]
rs6802787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6803109	0.83[ASN][1000 genomes]
rs6805186	0.92[ASN][1000 genomes]
rs6807804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6808426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs72929220	0.83[ASN][1000 genomes]
rs73141201	0.82[ASN][1000 genomes]
rs7426815	0.84[CHB][hapmap]
rs7429277	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7429392	0.89[CHB][hapmap]
rs7429915	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7431846	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7432710	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs7433589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7611100	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7618030	0.94[ASN][1000 genomes]
rs7618159	0.80[ASN][1000 genomes]
rs7622658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7625717	0.83[ASN][1000 genomes]
rs7631877	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7644235	0.92[ASN][1000 genomes]
rs7645690	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7645700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7647492	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs7647499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7650265	0.95[ASN][1000 genomes]
rs7653126	0.95[ASN][1000 genomes]
rs7653196	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs9809934	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9814643	0.95[ASN][1000 genomes]
rs9819246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9820745	0.95[ASN][1000 genomes]
rs9823159	0.89[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9831654	0.82[ASN][1000 genomes]
rs9842488	0.82[ASN][1000 genomes]
rs9843498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9843647	0.82[ASN][1000 genomes]
rs9843654	0.82[ASN][1000 genomes]
rs9845649	0.93[ASN][1000 genomes]
rs9855549	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9857812	0.81[ASN][1000 genomes]
rs9865411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9865776	0.89[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9870803	0.83[ASN][1000 genomes]
rs9880036	0.88[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9881835	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100238000-100252600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:100238000-100265400	Weak transcription	HSMMtube	muscle
3	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:100242000-100253200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:100242400-100265000	Weak transcription	HepG2	liver
6	chr3:100242400-100268000	Weak transcription	Ovary	ovary
7	chr3:100244600-100261400	Weak transcription	Fetal Lung	lung
8	chr3:100244800-100253000	Weak transcription	Esophagus	oesophagus
9	chr3:100244800-100255400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:100244800-100257800	Weak transcription	Spleen	Spleen
11	chr3:100244800-100267000	Weak transcription	HSMM	muscle
12	chr3:100245200-100252200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:100245200-100252200	Weak transcription	Aorta	Aorta
14	chr3:100245200-100253200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:100245400-100252200	Weak transcription	Fetal Stomach	stomach
16	chr3:100245400-100252400	Weak transcription	Adipose Nuclei	Adipose
17	chr3:100245400-100255800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:100245600-100254600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:100245800-100253200	Weak transcription	HMEC	breast
20	chr3:100247200-100253200	Weak transcription	Liver	Liver
21	chr3:100249400-100252400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:100249400-100252400	Weak transcription	Gastric	stomach
23	chr3:100250200-100253800	Enhancers	Brain Germinal Matrix	brain
24	chr3:100250800-100253800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr3:100250800-100255200	Enhancers	NHDF-Ad	bronchial
26	chr3:100251000-100257400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:100251400-100255000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:100251400-100255600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:100251600-100254200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:100251800-100257000	Enhancers	Hela-S3	cervix
31	chr3:100252000-100252400	Weak transcription	Lung	lung
32	chr3:100252000-100254000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:100252000-100254000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:100252000-100254200	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links