Variant report

Variant	rs7647492
Chromosome Location	chr3:100280613-100280614
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100267261..100269678-chr3:100279015..100280671,2	MCF-7	breast:
2	chr3:100248745..100251496-chr3:100279938..100282023,2	MCF-7	breast:
3	chr3:100223819..100226546-chr3:100278387..100280619,2	MCF-7	breast:
4	chr3:100279404..100280905-chr3:100281627..100283276,2	MCF-7	breast:
5	chr3:100279818..100281392-chr3:100419411..100421780,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11706258	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11710281	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11713258	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11715555	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11719592	0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12634314	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12634317	0.81[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12635025	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12635026	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12636452	0.83[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs28722928	0.86[JPT][hapmap]
rs4129205	0.85[CEU][hapmap]
rs4928048	0.83[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4928063	0.85[ASN][1000 genomes]
rs4928064	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4928065	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4928110	0.83[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs4928111	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs4928112	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55764247	0.85[ASN][1000 genomes]
rs55789829	0.80[ASN][1000 genomes]
rs56736439	0.85[ASN][1000 genomes]
rs58689996	0.80[ASN][1000 genomes]
rs58789183	0.83[ASN][1000 genomes]
rs59281247	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60511852	0.80[ASN][1000 genomes]
rs62274560	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62274561	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62274575	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62278361	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6441316	0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6441317	0.82[ASN][1000 genomes]
rs6441318	0.82[ASN][1000 genomes]
rs6441328	0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441329	0.84[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66747627	0.85[ASN][1000 genomes]
rs66828943	0.85[ASN][1000 genomes]
rs67348505	0.85[ASN][1000 genomes]
rs6763638	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs6799879	0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6799882	0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6799992	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6802787	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6805186	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6807804	0.82[CEU][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6808426	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7429277	0.83[JPT][hapmap]
rs7429915	0.88[CEU][hapmap]
rs7431846	0.91[JPT][hapmap]
rs7432710	0.82[CEU][hapmap]
rs7433589	0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7611100	0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7618030	0.83[ASN][1000 genomes]
rs7622658	0.82[CEU][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7631877	0.81[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7644235	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7645690	0.80[CEU][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7645700	0.84[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7647499	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7650265	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7653126	0.85[ASN][1000 genomes]
rs9809934	0.86[JPT][hapmap]
rs9814643	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9819246	0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9820745	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9843498	0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9845649	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9855549	0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9865411	0.82[CEU][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7647492	TMEM45A	cis	Whole Blood	GTEx
rs7647492	TMEM45A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100253800-100289000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:100253800-100289000	Weak transcription	Aorta	Aorta
4	chr3:100265800-100300600	Weak transcription	HepG2	liver
5	chr3:100268400-100282200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:100270800-100291000	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:100273400-100288600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:100273400-100297000	Weak transcription	Pancreas	Pancrea
9	chr3:100276000-100282600	Weak transcription	HSMMtube	muscle
10	chr3:100276800-100282600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:100276800-100309200	Weak transcription	NH-A	brain
12	chr3:100277000-100281800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:100277200-100298000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:100277600-100281000	Enhancers	Fetal Lung	lung
15	chr3:100277600-100304200	Weak transcription	Ovary	ovary
16	chr3:100278200-100281800	Weak transcription	Fetal Heart	heart
17	chr3:100278200-100305800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:100278600-100281400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:100279000-100281600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr3:100279000-100281800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr3:100279200-100281200	Enhancers	Fetal Kidney	kidney
22	chr3:100279400-100281200	Enhancers	Osteobl	bone
23	chr3:100279400-100281400	Enhancers	Fetal Stomach	stomach
24	chr3:100279600-100281000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:100279600-100281000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:100279600-100281800	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr3:100279600-100282200	Enhancers	Liver	Liver
28	chr3:100279800-100280800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:100279800-100280800	Enhancers	HSMM	muscle
30	chr3:100279800-100281600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:100279800-100282600	Enhancers	HMEC	breast
32	chr3:100280000-100280800	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr3:100280000-100280800	Enhancers	Stomach Mucosa	stomach
34	chr3:100280000-100280800	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr3:100280000-100280800	Enhancers	NHDF-Ad	bronchial
36	chr3:100280000-100281800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr3:100280000-100281800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:100280000-100281800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr3:100280000-100282200	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr3:100280000-100282800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:100280200-100283800	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr3:100280400-100280800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:100280400-100280800	Enhancers	Hela-S3	cervix
44	chr3:100280400-100280800	Enhancers	NHLF	lung
45	chr3:100280400-100281000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr3:100280400-100281800	Enhancers	H1 Cell Line	embryonic stem cell
47	chr3:100280400-100281800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:100280400-100282000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr3:100280600-100280800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr3:100280600-100280800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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