Variant report

Variant	rs28874914
Chromosome Location	chr14:71006813-71006814
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10137252	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10137299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10137634	0.82[ASN][1000 genomes]
rs10138448	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10138568	0.82[ASN][1000 genomes]
rs10141276	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10141338	0.82[ASN][1000 genomes]
rs10141894	0.82[ASN][1000 genomes]
rs10144489	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10146381	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10148450	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10162314	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11844731	0.82[ASN][1000 genomes]
rs12100977	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28418834	0.82[ASN][1000 genomes]
rs28529160	0.82[ASN][1000 genomes]
rs28668735	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28676781	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28688661	0.82[ASN][1000 genomes]
rs28797925	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3784071	0.82[ASN][1000 genomes]
rs7154745	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7158210	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73283952	0.82[ASN][1000 genomes]
rs9323540	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3364661	chr14:71003492-71010843	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70988000-71028200	Weak transcription	Esophagus	oesophagus
2	chr14:70988000-71029800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:70988800-71028800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:70990400-71029600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr14:70991400-71028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:70991600-71014600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:70991600-71022400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr14:70991600-71028200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:70991600-71028800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:70991800-71011800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:70992200-71022600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:70999800-71022400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:70999800-71024600	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:70999800-71029200	Weak transcription	Brain Anterior Caudate	brain
15	chr14:70999800-71030200	Weak transcription	Brain Angular Gyrus	brain
16	chr14:71000000-71028800	Weak transcription	Primary T cells from cord blood	blood
17	chr14:71004000-71030200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:71004200-71022600	Weak transcription	Spleen	Spleen
19	chr14:71004200-71028000	Weak transcription	Primary B cells from cord blood	blood
20	chr14:71004200-71034600	Weak transcription	Brain Substantia Nigra	brain
21	chr14:71004400-71011800	Weak transcription	Aorta	Aorta
22	chr14:71004400-71011800	Weak transcription	Left Ventricle	heart
23	chr14:71004400-71012000	Weak transcription	Pancreas	Pancrea
24	chr14:71004400-71022400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr14:71004400-71028000	Weak transcription	Liver	Liver
26	chr14:71004400-71029800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:71004400-71030000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:71004600-71011800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr14:71004600-71011800	Weak transcription	Adipose Nuclei	Adipose
30	chr14:71005000-71010600	Weak transcription	Ovary	ovary
31	chr14:71005000-71012000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr14:71005000-71022600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr14:71006400-71007000	Enhancers	Placenta	Placenta
34	chr14:71006400-71007200	Enhancers	Dnd41	blood
35	chr14:71006600-71007000	Enhancers	Primary T cells fromperipheralblood	blood
36	chr14:71006600-71007200	Enhancers	GM12878-XiMat	blood
37	chr14:71006800-71007200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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