Variant report

Variant	rs10144489
Chromosome Location	chr14:70994915-70994916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10137252	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137634	0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs10138448	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10138568	0.90[ASN][1000 genomes]
rs10141276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141338	0.90[ASN][1000 genomes]
rs10141894	0.90[ASN][1000 genomes]
rs10146381	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10148450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10162314	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12100977	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418834	0.90[ASN][1000 genomes]
rs28529160	0.90[ASN][1000 genomes]
rs28668735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28676781	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28688661	0.90[ASN][1000 genomes]
rs28797925	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28874914	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3784071	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs7154745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7158210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7158271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs73283952	0.90[ASN][1000 genomes]
rs9323540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70982000-71003600	Weak transcription	HSMM	muscle
2	chr14:70982400-71003200	Weak transcription	Psoas Muscle	Psoas
3	chr14:70985800-71003800	Weak transcription	HSMMtube	muscle
4	chr14:70987800-70995800	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:70987800-71005800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr14:70988000-71028200	Weak transcription	Esophagus	oesophagus
7	chr14:70988000-71029800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:70988400-71003800	Weak transcription	Primary B cells from cord blood	blood
9	chr14:70988600-70997000	Weak transcription	Placenta	Placenta
10	chr14:70988800-71028800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:70990400-71029600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:70991200-71006400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr14:70991400-70999400	Weak transcription	Primary T cells from cord blood	blood
14	chr14:70991400-71003800	Weak transcription	Brain Substantia Nigra	brain
15	chr14:70991400-71028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:70991600-70995200	Weak transcription	Lung	lung
17	chr14:70991600-70996800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:70991600-70998800	Weak transcription	Brain Anterior Caudate	brain
19	chr14:70991600-70999000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:70991600-70999200	Weak transcription	Brain Angular Gyrus	brain
21	chr14:70991600-71001200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:70991600-71003800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:70991600-71003800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:70991600-71003800	Weak transcription	Aorta	Aorta
25	chr14:70991600-71003800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr14:70991600-71003800	Weak transcription	Ovary	ovary
27	chr14:70991600-71003800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr14:70991600-71003800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr14:70991600-71003800	Weak transcription	Spleen	Spleen
30	chr14:70991600-71004000	Weak transcription	Right Ventricle	heart
31	chr14:70991600-71004000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr14:70991600-71004200	Weak transcription	Pancreas	Pancrea
33	chr14:70991600-71014600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:70991600-71022400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:70991600-71028200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr14:70991600-71028800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr14:70991800-70998800	Weak transcription	Liver	Liver
38	chr14:70991800-70999200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr14:70991800-71002200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr14:70991800-71003800	Weak transcription	Left Ventricle	heart
41	chr14:70991800-71011800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr14:70992000-70999000	Weak transcription	Adipose Nuclei	Adipose
43	chr14:70992200-71022600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:70994800-70995200	Enhancers	Primary hematopoietic stem cells	blood

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