Variant report
| Variant | rs28418834 |
|---|---|
| Chromosome Location | chr14:71076908-71076909 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:71076190..71078982-chr14:71275139..71277878,2 | MCF-7 | breast: |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MED6-1 | chr14:71075515-71078067 | ENSG00000245466 |
| 2 | lnc-TTC9-2 | chr14:71076803-71077094 | NONHSAT037572 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000006432 | Chromatin interaction |
| ENSG00000259153 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10130378 | 0.86[ASN][1000 genomes] |
| rs10137252 | 0.90[ASN][1000 genomes] |
| rs10137299 | 0.90[ASN][1000 genomes] |
| rs10137634 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10138448 | 1.00[ASN][1000 genomes] |
| rs10138568 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10141276 | 0.90[ASN][1000 genomes] |
| rs10141338 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10141894 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10144489 | 0.90[ASN][1000 genomes] |
| rs10146381 | 1.00[ASN][1000 genomes] |
| rs10148450 | 0.90[ASN][1000 genomes] |
| rs10162314 | 0.90[ASN][1000 genomes] |
| rs11844731 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11845091 | 0.81[ASN][1000 genomes] |
| rs12100977 | 0.90[ASN][1000 genomes] |
| rs28529160 | 0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28668735 | 0.90[ASN][1000 genomes] |
| rs28676781 | 0.90[ASN][1000 genomes] |
| rs28688661 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28797925 | 1.00[ASN][1000 genomes] |
| rs28874914 | 0.82[ASN][1000 genomes] |
| rs3784071 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57661754 | 0.81[ASN][1000 genomes] |
| rs7154745 | 0.82[ASN][1000 genomes] |
| rs7158210 | 1.00[ASN][1000 genomes] |
| rs7158271 | 0.95[ASN][1000 genomes] |
| rs73283952 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9323540 | 0.90[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:71068400-71078600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
