Variant report

Variant	rs9323540
Chromosome Location	chr14:70989762-70989763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70983745..70986575-chr14:70987708..70990108,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10137252	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137634	0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs10138448	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10138568	0.90[ASN][1000 genomes]
rs10141276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141338	0.90[ASN][1000 genomes]
rs10141894	0.90[ASN][1000 genomes]
rs10144489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146381	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10148450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10162314	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12100977	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418834	0.90[ASN][1000 genomes]
rs28529160	0.90[ASN][1000 genomes]
rs28668735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28676781	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28688661	0.90[ASN][1000 genomes]
rs28797925	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28874914	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3784071	1.00[ASW][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs7154745	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7158210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7158271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs73283952	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr14:70975800-70990000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:70981200-70994400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:70982000-71003600	Weak transcription	HSMM	muscle
5	chr14:70982400-71003200	Weak transcription	Psoas Muscle	Psoas
6	chr14:70985800-71003800	Weak transcription	HSMMtube	muscle
7	chr14:70986000-70991800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:70987000-70989800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr14:70987600-70990200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:70987600-70993200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr14:70987800-70990800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:70987800-70995800	Weak transcription	Colon Smooth Muscle	Colon
13	chr14:70987800-71005800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:70988000-70989800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr14:70988000-70990600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr14:70988000-70991000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:70988000-70991000	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:70988000-70991000	Weak transcription	Spleen	Spleen
19	chr14:70988000-71028200	Weak transcription	Esophagus	oesophagus
20	chr14:70988000-71029800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr14:70988200-70989800	Weak transcription	Right Ventricle	heart
22	chr14:70988200-70990200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:70988200-70990800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr14:70988200-70991400	Strong transcription	Primary T cells from cord blood	blood
25	chr14:70988400-70994600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:70988400-71003800	Weak transcription	Primary B cells from cord blood	blood
27	chr14:70988600-70989800	ZNF genes & repeats	Aorta	Aorta
28	chr14:70988600-70990200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:70988600-70991600	ZNF genes & repeats	Ovary	ovary
30	chr14:70988600-70993000	Weak transcription	Brain Germinal Matrix	brain
31	chr14:70988600-70993200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:70988600-70997000	Weak transcription	Placenta	Placenta
33	chr14:70988800-71028800	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr14:70989000-70989800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr14:70989000-70991600	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:70989200-70990000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr14:70989200-70990600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:70989400-70989800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr14:70989400-70989800	Strong transcription	Brain Cingulate Gyrus	brain
40	chr14:70989400-70990000	ZNF genes & repeats	Fetal Heart	heart
41	chr14:70989400-70990400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr14:70989400-70990400	Transcr. at gene 5' and 3'	Brain Substantia Nigra	brain
43	chr14:70989400-70991000	Weak transcription	Fetal Stomach	stomach
44	chr14:70989400-70991600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr14:70989400-70991600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:70989400-70991600	Strong transcription	Brain Angular Gyrus	brain
47	chr14:70989400-70991600	Strong transcription	Brain Anterior Caudate	brain
48	chr14:70989400-70991600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr14:70989400-70991600	Strong transcription	Gastric	stomach
50	chr14:70989400-70991600	Strong transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links