Variant report

Variant	rs2888720
Chromosome Location	chr13:93100573-93100574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93097384..93100065-chr13:93100328..93101887,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1023013	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1926608	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1926610	0.86[CEU][hapmap];0.81[ASN][1000 genomes]
rs2031803	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs2104624	0.92[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap]
rs2209836	0.92[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2209839	0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap]
rs2209840	0.88[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap]
rs2225158	0.84[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2374006	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2374009	0.92[CEU][hapmap];0.80[JPT][hapmap]
rs4142024	0.82[CHD][hapmap]
rs4771859	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs4773682	0.92[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6492607	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs7317952	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7324463	0.85[CHD][hapmap]
rs7329553	0.85[CHD][hapmap]
rs7988626	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7996390	0.92[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9516072	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2888720	KCNJ11	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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