Variant report

Variant	rs4142024
Chromosome Location	chr13:93054579-93054580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93051605..93055032-chr13:93062558..93064310,3	K562	blood:
2	chr13:93052363..93054912-chr13:93062612..93064278,2	K562	blood:
3	chr13:93053170..93056037-chr13:93069386..93072124,2	K562	blood:
4	chr13:93050175..93052998-chr13:93053472..93056340,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1023013	0.94[CHD][hapmap];0.91[ASN][1000 genomes]
rs1023014	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1116887	0.84[JPT][hapmap]
rs1926608	0.92[ASN][1000 genomes]
rs1926609	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1926610	0.93[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2094475	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2209836	0.87[ASN][1000 genomes]
rs2225158	0.94[CHD][hapmap];0.87[ASN][1000 genomes]
rs2374006	0.90[ASN][1000 genomes]
rs2888720	0.82[CHD][hapmap]
rs4771859	0.94[CHD][hapmap]
rs4773682	0.87[ASN][1000 genomes]
rs6492607	0.94[CHD][hapmap]
rs7317952	0.87[ASN][1000 genomes]
rs7318720	0.92[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs7324463	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7329163	0.80[TSI][hapmap]
rs7329553	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7988626	0.91[ASN][1000 genomes]
rs7996390	0.87[ASN][1000 genomes]
rs927966	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9301803	0.82[TSI][hapmap]
rs9516072	0.94[CHD][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93049600-93060200	Weak transcription	Fetal Intestine Small	intestine
2	chr13:93053200-93058200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links