Variant report

Variant	rs7318720
Chromosome Location	chr13:93106253-93106254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1023014	0.86[EUR][1000 genomes]
rs1926609	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2031803	0.91[CHD][hapmap];0.80[ASN][1000 genomes]
rs2094475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2374016	0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4142024	0.92[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs7324463	0.92[CEU][hapmap];0.87[TSI][hapmap]
rs7329163	0.81[TSI][hapmap]
rs7329553	0.92[CEU][hapmap];0.87[TSI][hapmap]
rs927966	0.84[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93105800-93114800	Weak transcription	Fetal Brain Male	brain
2	chr13:93106200-93115400	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links