Variant report

Variant	rs1926609
Chromosome Location	chr13:93056516-93056517
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1023013	0.90[ASN][1000 genomes]
rs1023014	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1116887	0.84[JPT][hapmap]
rs1926608	0.92[ASN][1000 genomes]
rs1926610	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2094475	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs2209836	0.87[ASN][1000 genomes]
rs2225158	0.86[ASN][1000 genomes]
rs2374006	0.89[ASN][1000 genomes]
rs4142024	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4773682	0.86[ASN][1000 genomes]
rs7317952	0.86[ASN][1000 genomes]
rs7318720	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7324463	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7329553	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7988626	0.90[ASN][1000 genomes]
rs7996390	0.86[ASN][1000 genomes]
rs927966	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs9516072	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93049600-93060200	Weak transcription	Fetal Intestine Small	intestine
2	chr13:93053200-93058200	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links