Variant report

Variant	rs1926610
Chromosome Location	chr13:93056312-93056313
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93050175..93052998-chr13:93053472..93056340,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1023013	0.95[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1023014	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1926608	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1926609	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2031803	0.86[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs2104624	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs2209836	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2209839	0.86[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2209840	0.91[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs2225158	0.91[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2374006	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2374009	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2888720	0.86[CEU][hapmap]
rs4142024	0.93[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4771859	0.95[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs4773682	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6492607	0.95[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs7317952	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7324463	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7329553	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7988626	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7996390	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9301805	0.88[EUR][1000 genomes]
rs9516072	0.95[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93049600-93060200	Weak transcription	Fetal Intestine Small	intestine
2	chr13:93053200-93058200	Weak transcription	Right Atrium	heart

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