Variant report

Variant	rs927966
Chromosome Location	chr13:93071735-93071736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1023012	0.85[YRI][hapmap]
rs1023014	0.88[EUR][1000 genomes]
rs1536620	0.83[YRI][hapmap]
rs1926609	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs2031803	0.85[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs2094475	0.85[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2209834	0.85[YRI][hapmap]
rs2374016	0.81[JPT][hapmap]
rs4142024	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4773681	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs7318720	0.84[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7324463	0.92[CEU][hapmap]
rs7329553	0.92[CEU][hapmap]
rs7334105	0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs7985054	0.83[AFR][1000 genomes]
rs9523668	0.83[YRI][hapmap]
rs9523669	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93071000-93072400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:93071400-93073200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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