Variant report

Variant	rs2889112
Chromosome Location	chr3:144583461-144583462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12630923	0.80[AMR][1000 genomes]
rs12695787	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13092397	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1358450	0.82[EUR][1000 genomes]
rs1518242	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1607353	0.82[EUR][1000 genomes]
rs1607354	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1914634	0.82[AMR][1000 genomes]
rs1914638	0.80[AMR][1000 genomes]
rs4681630	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6789186	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7611778	0.80[AMR][1000 genomes]
rs940067	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9826226	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9842453	0.80[AMR][1000 genomes]
rs9844072	0.80[AMR][1000 genomes]
rs9857472	0.80[AMR][1000 genomes]
rs9871815	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1005754	chr3:144529346-144984363	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144578400-144584800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:144583200-144584200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:144583400-144583800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:144583400-144583800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:144583400-144583800	Enhancers	NHEK	skin
6	chr3:144583400-144584200	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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