Variant report
| Variant | rs4681630 |
|---|---|
| Chromosome Location | chr3:144579406-144579407 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12630923 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12695787 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs13092397 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1358450 | 0.88[EUR][1000 genomes] |
| rs1518242 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1607353 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1607354 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1914634 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1914638 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2889112 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6789186 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7611778 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs940067 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9826226 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9842453 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9844072 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9857472 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9857704 | 0.88[EUR][1000 genomes] |
| rs9862354 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9871815 | 0.86[AMR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv591928 | chr3:144050897-144822081 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv3357831 | chr3:144433846-144790831 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3405013 | chr3:144433866-144790801 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv829746 | chr3:144451478-144618224 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv829747 | chr3:144463330-144654092 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1005754 | chr3:144529346-144984363 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:144578400-144584800 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
