Variant report

Variant	rs9826226
Chromosome Location	chr3:144536210-144536211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12630923	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12695787	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092397	0.83[AMR][1000 genomes]
rs1518242	0.83[AMR][1000 genomes]
rs1607354	0.83[AMR][1000 genomes]
rs1914634	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1914638	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2889112	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4681630	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6789186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611778	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs940067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9842453	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9844072	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9857472	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9857704	0.82[EUR][1000 genomes]
rs9871815	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1005754	chr3:144529346-144984363	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144535200-144536600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:144535800-144539600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:144535800-144539600	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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